Analysis of interatomic Contacts of Structural Units in PDB entry:
4G8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G8F entry

There are 2 chains in PDB entry 4G8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASN 205
B
 ASN 1ASP 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 4G8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 99Right-handed 310
Helix 2
2
B
95 99Right-handed 310
Helix 3
3
B
128 132Right-handed 310
Helix 4
4
B
143 151Right-handed alpha
Helix 5
5
B
210 214Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 4G8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
121 126parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
51 56anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
121 126parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
114 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
60 69anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
185 193anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
135 141anti-parallel
Strand 5
B
136 141anti-parallel
Strand 6
B
152 162anti-parallel
Strand 7
B
200 209anti-parallel
Strand 8
B
182 184anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
185 193anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
135 141anti-parallel
Strand 5
B
136 141anti-parallel
Strand 6
B
152 162anti-parallel
Strand 7
B
200 209anti-parallel
Strand 8
B
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
121 126parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
31 44anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
121 126parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
167 173anti-parallel
Strand 3
B
219 226anti-parallel
Strand 4
B
245 252anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il