Analysis of interatomic Contacts of Structural Units in PDB entry:
4G8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G8X entry

There are 4 chains in PDB entry 4G8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 296HIS 356
B
 MSE 1SER 197
C
 ASP 302HIS 356
D
 MSE 1LYS 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4G8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
296 304Right-handed alpha
Helix 2
2
A
305 307Right-handed 310
Helix 3
3
A
308 320Right-handed alpha
Helix 4
4
A
328 336Right-handed alpha
Helix 5
5
A
339 351Right-handed alpha
Helix 6
6
B
73 78Right-handed alpha
Helix 7
7
B
79 81Right-handed 310
Helix 8
8
B
93 109Right-handed alpha
Helix 9
9
B
118 143Right-handed alpha
Helix 10
10
B
160 170Right-handed alpha
Helix 11
11
B
174 196Right-handed alpha
Helix 12
12
C
310 318Right-handed alpha
Helix 13
13
C
328 333Right-handed alpha
Helix 14
14
C
340 352Right-handed alpha
Helix 15
15
D
33 37Right-handed 310
Helix 16
16
D
92 108Right-handed alpha
Helix 17
17
D
120 144Right-handed alpha
Helix 18
18
D
160 168Right-handed alpha
Helix 19
19
D
176 196Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4G8X. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
21 28anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
43 47parallel
Strand 4
B
53 58anti-parallel
Strand 5
B
83 85anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
12 14anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 44first strand
Strand 2
D
57 58anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il