Analysis of interatomic Contacts of Structural Units in PDB entry:
4G9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G9C entry

There are 2 chains in PDB entry 4G9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 448LYS 723
B
 ASP 448LYS 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 4G9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
491 506Right-handed alpha
Helix 2
2
A
537 543Right-handed alpha
Helix 3
3
A
549 570Right-handed alpha
Helix 4
4
A
621 627Right-handed alpha
Helix 5
5
A
634 652Right-handed alpha
Helix 6
6
A
661 672Right-handed alpha
Helix 7
7
A
677 681Right-handed 310
Helix 8
8
A
686 697Right-handed alpha
Helix 9
9
A
700 704Right-handed 310
Helix 10
10
A
706 718Right-handed alpha
Helix 11
11
B
491 506Right-handed alpha
Helix 12
12
B
537 543Right-handed alpha
Helix 13
13
B
549 570Right-handed alpha
Helix 14
14
B
621 627Right-handed alpha
Helix 15
15
B
634 652Right-handed alpha
Helix 16
16
B
661 672Right-handed alpha
Helix 17
17
B
677 681Right-handed 310
Helix 18
18
B
686 697Right-handed alpha
Helix 19
19
B
700 704Right-handed 310
Helix 20
20
B
706 718Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4G9C. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 464first strand
Strand 2
A
471 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
582 585anti-parallel
Strand 3
A
590 592anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 464first strand
Strand 2
B
470 475anti-parallel
Strand 3
B
479 484anti-parallel
Strand 4
B
526 530anti-parallel
Strand 5
B
516 520anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 536first strand
Strand 2
B
582 585anti-parallel
Strand 3
B
590 592anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il