Analysis of interatomic Contacts of Structural Units in PDB entry:
4GAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GAO entry

There are 8 chains in PDB entry 4GAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 60THR 252
B
 GLY 60VAL 251
C
 ILE 2GLN 10
D
 LYS 62PRO 249
E
 ILE 2GLN 10
F
 ILE 2LYS 11
G
 GLY 60THR 252
H
 ILE 2GLN 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 4GAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 71Right-handed alpha
Helix 2
2
A
82 93Right-handed alpha
Helix 3
3
A
99 110Right-handed alpha
Helix 4
4
A
119 129Right-handed alpha
Helix 5
5
A
133 147Right-handed alpha
Helix 6
6
A
150 166Right-handed alpha
Helix 7
7
A
175 186Right-handed alpha
Helix 8
8
A
192 203Right-handed alpha
Helix 9
9
A
209 223Right-handed alpha
Helix 10
10
A
237 248Right-handed alpha
Helix 11
11
A
249 252Right-handed 310
Helix 12
12
B
61 71Right-handed alpha
Helix 13
13
B
82 94Right-handed alpha
Helix 14
14
B
99 110Right-handed alpha
Helix 15
15
B
119 129Right-handed alpha
Helix 16
16
B
133 147Right-handed alpha
Helix 17
17
B
150 166Right-handed alpha
Helix 18
18
B
174 186Right-handed alpha
Helix 19
19
B
192 204Right-handed alpha
Helix 20
20
B
209 223Right-handed alpha
Helix 21
21
B
237 251Right-handed alpha
Helix 22
22
C
3 10Right-handed alpha
Helix 23
23
D
63 71Right-handed alpha
Helix 24
24
D
82 93Right-handed alpha
Helix 25
25
D
99 110Right-handed alpha
Helix 26
26
D
119 130Right-handed alpha
Helix 27
27
D
133 147Right-handed alpha
Helix 28
28
D
150 166Right-handed alpha
Helix 29
29
D
175 186Right-handed alpha
Helix 30
30
D
192 203Right-handed alpha
Helix 31
31
D
209 223Right-handed alpha
Helix 32
32
D
237 248Right-handed alpha
Helix 33
33
E
3 10Right-handed alpha
Helix 34
34
F
3 10Right-handed alpha
Helix 35
35
G
61 72Right-handed alpha
Helix 36
36
G
82 93Right-handed alpha
Helix 37
37
G
99 110Right-handed alpha
Helix 38
38
G
119 130Right-handed alpha
Helix 39
39
G
133 146Right-handed alpha
Helix 40
40
G
147 149Right-handed 310
Helix 41
41
G
150 166Right-handed alpha
Helix 42
42
G
174 186Right-handed alpha
Helix 43
43
G
192 204Right-handed alpha
Helix 44
44
G
209 223Right-handed alpha
Helix 45
45
G
237 248Right-handed alpha
Helix 46
46
G
249 251Right-handed 310
Helix 47
47
H
3 10Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4GAO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 81first strand
Strand 2
D
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 174first strand
Strand 2
D
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
73 74first strand
Strand 2
G
77 81anti-parallel
Strand 3
G
117 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il