Analysis of interatomic Contacts of Structural Units in PDB entry:
4GB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GB7 entry

There is 1 chain in PDB entry 4GB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 32GLN 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4GB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 54Right-handed alpha
Helix 2
2
A
55 60Right-handed 310
Helix 3
3
A
98 105Right-handed alpha
Helix 4
4
A
136 138Right-handed 310
Helix 5
5
A
139 153Right-handed alpha
Helix 6
6
A
161 166Right-handed alpha
Helix 7
7
A
167 170Right-handed 310
Helix 8
8
A
172 177Right-handed alpha
Helix 9
9
A
178 184Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
226 233Right-handed alpha
Helix 12
12
A
247 263Right-handed alpha
Helix 13
13
A
265 274Right-handed alpha
Helix 14
14
A
303 316Right-handed alpha
Helix 15
15
A
328 336Right-handed alpha
Helix 16
16
A
398 415Right-handed alpha
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There are 6 sheets in PDB entry 4GB7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
284 287anti-parallel
Strand 3
A
300 302anti-parallel
Strand 4
A
133 134anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
94 97anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 123first strand
Strand 2
A
107 114anti-parallel
Strand 3
A
384 390anti-parallel
Strand 4
A
374 379anti-parallel
Strand 5
A
366 370anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
235 238anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
323 324anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
356 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il