Analysis of interatomic Contacts of Structural Units in PDB entry:
4GBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GBD entry

There are 2 chains in PDB entry 4GBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6ALA 440
B
 PRO 7ALA 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 4GBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 52Right-handed alpha
Helix 2
2
A
74 81Right-handed 310
Helix 3
3
A
88 96Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
106 124Right-handed alpha
Helix 6
6
A
135 147Right-handed alpha
Helix 7
7
A
166 181Right-handed alpha
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
200 215Right-handed alpha
Helix 10
10
A
225 237Right-handed alpha
Helix 11
11
A
239 248Right-handed alpha
Helix 12
12
A
263 274Right-handed alpha
Helix 13
13
A
280 287Right-handed alpha
Helix 14
14
A
293 300Right-handed alpha
Helix 15
15
A
318 335Right-handed alpha
Helix 16
16
A
341 350Right-handed alpha
Helix 17
17
A
350 358Right-handed alpha
Helix 18
18
A
381 385Right-handed 310
Helix 19
19
A
389 398Right-handed alpha
Helix 20
20
A
399 401Right-handed 310
Helix 21
21
A
423 440Right-handed alpha
Helix 22
22
B
45 52Right-handed alpha
Helix 23
23
B
74 81Right-handed 310
Helix 24
24
B
88 96Right-handed alpha
Helix 25
25
B
96 105Right-handed alpha
Helix 26
26
B
106 124Right-handed alpha
Helix 27
27
B
135 147Right-handed alpha
Helix 28
28
B
166 182Right-handed alpha
Helix 29
29
B
195 199Right-handed 310
Helix 30
30
B
200 215Right-handed alpha
Helix 31
31
B
225 237Right-handed alpha
Helix 32
32
B
239 247Right-handed alpha
Helix 33
33
B
263 274Right-handed alpha
Helix 34
34
B
280 287Right-handed alpha
Helix 35
35
B
293 300Right-handed alpha
Helix 36
36
B
318 335Right-handed alpha
Helix 37
37
B
341 350Right-handed alpha
Helix 38
38
B
350 357Right-handed alpha
Helix 39
39
B
381 385Right-handed 310
Helix 40
40
B
389 398Right-handed alpha
Helix 41
41
B
399 401Right-handed 310
Helix 42
42
B
423 440Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4GBD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
8 17anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
38 44anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
8 17anti-parallel
Strand 3
A
53 66parallel
Strand 4
A
374 378anti-parallel
Strand 5
A
403 408anti-parallel
Strand 6
A
411 415anti-parallel
Strand 7
A
418 419anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
126 132parallel
Strand 3
A
149 156parallel
Strand 4
A
187 193parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
254 258parallel
Strand 3
A
276 279parallel
Strand 4
A
303 306parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
8 17anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
38 44anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
8 17anti-parallel
Strand 3
B
53 66parallel
Strand 4
B
374 378anti-parallel
Strand 5
B
403 408anti-parallel
Strand 6
B
411 415anti-parallel
Strand 7
B
418 419anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
126 132parallel
Strand 3
B
149 156parallel
Strand 4
B
187 193parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 222first strand
Strand 2
B
254 258parallel
Strand 3
B
276 279parallel
Strand 4
B
303 306parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il