Analysis of interatomic Contacts of Structural Units in PDB entry:
4GBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GBF entry

There are 2 chains in PDB entry 4GBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 399PRO 767
B
 ASP 398PRO 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4GBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
399 406Right-handed alpha
Helix 2
2
A
432 437Right-handed alpha
Helix 3
3
A
480 487Right-handed 310
Helix 4
4
A
491 496Right-handed 310
Helix 5
5
A
550 553Right-handed 310
Helix 6
6
A
591 605Right-handed alpha
Helix 7
7
A
606 610Right-handed 310
Helix 8
8
A
633 637Right-handed 310
Helix 9
9
A
673 679Right-handed alpha
Helix 10
10
A
715 719Right-handed 310
Helix 11
11
B
399 406Right-handed alpha
Helix 12
12
B
432 437Right-handed alpha
Helix 13
13
B
480 487Right-handed 310
Helix 14
14
B
491 496Right-handed 310
Helix 15
15
B
550 553Right-handed 310
Helix 16
16
B
591 605Right-handed alpha
Helix 17
17
B
606 610Right-handed 310
Helix 18
18
B
633 637Right-handed 310
Helix 19
19
B
652 656Right-handed 310
Helix 20
20
B
673 679Right-handed alpha
Helix 21
21
B
715 719Right-handed 310
Helix 22
22
B
746 750Right-handed 310
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There are 14 sheets in PDB entry 4GBF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
417 421anti-parallel
Strand 3
A
427 431anti-parallel
Strand 4
A
451 452anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 461first strand
Strand 2
A
465 470anti-parallel
Strand 3
A
473 478anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 508first strand
Strand 2
A
512 522anti-parallel
Strand 3
A
529 540anti-parallel
Strand 4
A
546 549anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 560first strand
Strand 2
A
570 576anti-parallel
Strand 3
A
584 590anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 618first strand
Strand 2
A
622 628anti-parallel
Strand 3
A
642 652anti-parallel
Strand 4
A
655 661anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 686first strand
Strand 2
A
691 696anti-parallel
Strand 3
A
700 705anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 726first strand
Strand 2
A
730 735anti-parallel
Strand 3
A
740 744anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 413first strand
Strand 2
B
417 421anti-parallel
Strand 3
B
427 431anti-parallel
Strand 4
B
451 452anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 461first strand
Strand 2
B
465 470anti-parallel
Strand 3
B
473 478anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 508first strand
Strand 2
B
512 522anti-parallel
Strand 3
B
529 540anti-parallel
Strand 4
B
546 549anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 560first strand
Strand 2
B
570 576anti-parallel
Strand 3
B
584 590anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 618first strand
Strand 2
B
622 628anti-parallel
Strand 3
B
642 650anti-parallel
Strand 4
B
657 661anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
682 686first strand
Strand 2
B
691 696anti-parallel
Strand 3
B
700 705anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
721 726first strand
Strand 2
B
730 735anti-parallel
Strand 3
B
740 744anti-parallel
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