Analysis of interatomic Contacts of Structural Units in PDB entry:
4GBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GBJ entry

There are 4 chains in PDB entry 4GBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	THR 293
B	LYS 4	THR 293
C	GLU 3	LYS 294
D	LYS 4	THR 293

There are 61 helices in PDB entry 4GBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	24	Right-handed alpha
Helix 2	2	A	51	56	Right-handed 310
Helix 3	3	A	68	76	Right-handed alpha
Helix 4	4	A	77	85	Right-handed alpha
Helix 5	5	A	97	111	Right-handed alpha
Helix 6	6	A	123	129	Right-handed alpha
Helix 7	7	A	139	152	Right-handed alpha
Helix 8	8	A	165	195	Right-handed alpha
Helix 9	9	A	198	208	Right-handed alpha
Helix 10	10	A	213	226	Right-handed alpha
Helix 11	11	A	234	252	Right-handed alpha
Helix 12	12	A	256	272	Right-handed alpha
Helix 13	13	A	278	282	Right-handed 310
Helix 14	14	A	283	290	Right-handed alpha
Helix 15	15	B	13	24	Right-handed alpha
Helix 16	16	B	34	37	Right-handed 310
Helix 17	17	B	38	44	Right-handed alpha
Helix 18	18	B	51	56	Right-handed 310
Helix 19	19	B	68	76	Right-handed alpha
Helix 20	20	B	77	85	Right-handed alpha
Helix 21	21	B	97	111	Right-handed alpha
Helix 22	22	B	123	129	Right-handed alpha
Helix 23	23	B	139	151	Right-handed alpha
Helix 24	24	B	165	195	Right-handed alpha
Helix 25	25	B	198	209	Right-handed alpha
Helix 26	26	B	213	226	Right-handed alpha
Helix 27	27	B	234	252	Right-handed alpha
Helix 28	28	B	256	272	Right-handed alpha
Helix 29	29	B	278	283	Right-handed 310
Helix 30	30	B	284	290	Right-handed alpha
Helix 31	31	C	13	24	Right-handed alpha
Helix 32	32	C	34	37	Right-handed 310
Helix 33	33	C	38	43	Right-handed alpha
Helix 34	34	C	51	56	Right-handed 310
Helix 35	35	C	68	76	Right-handed alpha
Helix 36	36	C	77	85	Right-handed alpha
Helix 37	37	C	97	111	Right-handed alpha
Helix 38	38	C	123	130	Right-handed alpha
Helix 39	39	C	139	151	Right-handed alpha
Helix 40	40	C	165	195	Right-handed alpha
Helix 41	41	C	198	209	Right-handed alpha
Helix 42	42	C	213	226	Right-handed alpha
Helix 43	43	C	234	251	Right-handed alpha
Helix 44	44	C	256	272	Right-handed alpha
Helix 45	45	C	278	282	Right-handed 310
Helix 46	46	C	283	290	Right-handed alpha
Helix 47	47	D	13	24	Right-handed alpha
Helix 48	48	D	34	45	Right-handed 310
Helix 49	49	D	51	56	Right-handed alpha
Helix 50	50	D	68	76	Right-handed alpha
Helix 51	51	D	77	85	Right-handed alpha
Helix 52	52	D	97	111	Right-handed alpha
Helix 53	53	D	123	129	Right-handed alpha
Helix 54	54	D	139	151	Right-handed alpha
Helix 55	55	D	165	195	Right-handed alpha
Helix 56	56	D	198	209	Right-handed alpha
Helix 57	57	D	213	226	Right-handed alpha
Helix 58	58	D	234	251	Right-handed alpha
Helix 59	59	D	256	272	Right-handed alpha
Helix 60	60	D	278	282	Right-handed 310
Helix 61	61	D	283	290	Right-handed alpha

There are 8 sheets in PDB entry 4GBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	27	31	parallel
Strand 3	A	4	8	parallel
Strand 4	A	61	64	parallel
Strand 5	A	89	92	parallel
Strand 6	A	114	117	parallel
Strand 7	A	133	138	anti-parallel
Strand 8	A	120	121	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	27	31	parallel
Strand 3	A	4	8	parallel
Strand 4	A	61	64	parallel
Strand 5	A	89	92	parallel
Strand 6	A	114	117	parallel
Strand 7	A	133	138	anti-parallel
Strand 8	A	156	159	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	28	31	parallel
Strand 3	B	5	8	parallel
Strand 4	B	61	64	parallel
Strand 5	B	89	92	parallel
Strand 6	B	114	117	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	133	136	anti-parallel
Strand 3	B	156	159	parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	27	31	parallel
Strand 3	C	4	8	parallel
Strand 4	C	61	64	parallel
Strand 5	C	89	92	parallel
Strand 6	C	114	117	parallel
Strand 7	C	133	138	anti-parallel
Strand 8	C	120	121	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	27	31	parallel
Strand 3	C	4	8	parallel
Strand 4	C	61	64	parallel
Strand 5	C	89	92	parallel
Strand 6	C	114	117	parallel
Strand 7	C	133	138	anti-parallel
Strand 8	C	156	159	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	28	31	parallel
Strand 3	D	5	8	parallel
Strand 4	D	61	64	parallel
Strand 5	D	89	92	parallel
Strand 6	D	114	117	parallel
Strand 7	D	133	138	anti-parallel
Strand 8	D	120	121	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	28	31	parallel
Strand 3	D	5	8	parallel
Strand 4	D	61	64	parallel
Strand 5	D	89	92	parallel
Strand 6	D	114	117	parallel
Strand 7	D	133	138	anti-parallel
Strand 8	D	156	159	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GBJ