Analysis of interatomic Contacts of Structural Units in PDB entry:
4GC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GC8 entry

There are 3 chains in PDB entry 4GC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 47MET 230
B
 VAL 48MET 230
C
 VAL 48MET 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4GC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 76Right-handed alpha
Helix 2
2
A
91 96Right-handed alpha
Helix 3
3
A
121 133Right-handed alpha
Helix 4
4
A
147 170Right-handed alpha
Helix 5
5
A
220 228Right-handed alpha
Helix 6
6
B
49 76Right-handed alpha
Helix 7
7
B
91 96Right-handed alpha
Helix 8
8
B
121 133Right-handed alpha
Helix 9
9
B
147 170Right-handed alpha
Helix 10
10
B
220 228Right-handed alpha
Helix 11
11
C
49 76Right-handed alpha
Helix 12
12
C
91 97Right-handed alpha
Helix 13
13
C
121 133Right-handed alpha
Helix 14
14
C
147 170Right-handed alpha
Helix 15
15
C
220 228Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4GC8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 90first strand
Strand 2
A
197 207anti-parallel
Strand 3
A
210 219anti-parallel
Strand 4
A
113 120anti-parallel
Strand 5
A
103 109anti-parallel
Strand 6
A
178 183anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 90first strand
Strand 2
B
197 207anti-parallel
Strand 3
B
210 219anti-parallel
Strand 4
B
113 120anti-parallel
Strand 5
B
103 109anti-parallel
Strand 6
B
178 183anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 90first strand
Strand 2
C
197 207anti-parallel
Strand 3
C
210 219anti-parallel
Strand 4
C
115 120anti-parallel
Strand 5
C
103 108anti-parallel
Strand 6
C
178 183anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il