Analysis of interatomic Contacts of Structural Units in PDB entry:
4GC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GC9 entry

There is 1 chain in PDB entry 4GC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 10LYS 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4GC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
40 51Right-handed alpha
Helix 3
3
A
67 75Right-handed alpha
Helix 4
4
A
90 101Right-handed alpha
Helix 5
5
A
122 126Right-handed 310
Helix 6
6
A
143 161Right-handed alpha
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
178 186Right-handed alpha
Helix 9
9
A
194 202Right-handed alpha
Helix 10
10
A
213 217Right-handed 310
Helix 11
11
A
241 253Right-handed alpha
Helix 12
12
A
259 265Right-handed alpha
Helix 13
13
A
266 268Right-handed 310
Helix 14
14
A
272 284Right-handed alpha
Helix 15
15
A
291 295Right-handed 310
Helix 16
16
A
296 314Right-handed alpha
Helix 17
17
A
321 326Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4GC9.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
80 84parallel
Strand 3
A
58 62parallel
Strand 4
A
136 140parallel
Strand 5
A
171 177parallel
Strand 6
A
225 232anti-parallel
Strand 7
A
204 212anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il