Analysis of interatomic Contacts of Structural Units in PDB entry:
4GD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GD5 entry

There are 2 chains in PDB entry 4GD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34LYS 276
B
 ASN 34LYS 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4GD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 59Right-handed alpha
Helix 2
2
A
70 80Right-handed alpha
Helix 3
3
A
93 98Right-handed alpha
Helix 4
4
A
125 134Right-handed alpha
Helix 5
5
A
139 144Right-handed 310
Helix 6
6
A
159 170Right-handed alpha
Helix 7
7
A
172 176Right-handed 310
Helix 8
8
A
185 196Right-handed alpha
Helix 9
9
A
206 208Right-handed 310
Helix 10
10
A
223 229Right-handed alpha
Helix 11
11
A
248 260Right-handed alpha
Helix 12
12
A
260 270Right-handed alpha
Helix 13
13
B
44 59Right-handed alpha
Helix 14
14
B
70 80Right-handed alpha
Helix 15
15
B
93 98Right-handed alpha
Helix 16
16
B
125 134Right-handed alpha
Helix 17
17
B
139 144Right-handed 310
Helix 18
18
B
159 170Right-handed alpha
Helix 19
19
B
172 176Right-handed 310
Helix 20
20
B
185 196Right-handed alpha
Helix 21
21
B
206 208Right-handed 310
Helix 22
22
B
223 229Right-handed alpha
Helix 23
23
B
248 260Right-handed alpha
Helix 24
24
B
260 270Right-handed alpha
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There are 6 sheets in PDB entry 4GD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
35 40parallel
Strand 3
A
85 88parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
102 116anti-parallel
Strand 6
A
199 204anti-parallel
Strand 7
A
151 155parallel
Strand 8
A
181 183parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
35 40parallel
Strand 3
A
85 88parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
102 116anti-parallel
Strand 6
A
212 214anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
216 217parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
35 40parallel
Strand 3
B
85 88parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
102 116anti-parallel
Strand 6
B
199 204anti-parallel
Strand 7
B
151 155parallel
Strand 8
B
181 183parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
35 40parallel
Strand 3
B
85 88parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
102 116anti-parallel
Strand 6
B
212 214anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
216 217parallel
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