Analysis of interatomic Contacts of Structural Units in PDB entry:
4GD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GD9 entry

There are 4 chains in PDB entry 4GD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 49GLY 248
B
 ASN 49GLY 248
C
 ASN 49GLY 248
D
 ASN 49GLY 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 4GD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
115 121Right-handed 310
Helix 3
3
B
49 51Right-handed 310
Helix 4
4
B
115 121Right-handed 310
Helix 5
5
B
143 218Right-handed alpha
Helix 6
6
C
49 51Right-handed 310
Helix 7
7
C
115 121Right-handed 310
Helix 8
8
C
213 218Right-handed alpha
Helix 9
9
D
49 53Right-handed 310
Helix 10
10
D
115 121Right-handed 310
Helix 11
11
D
214 218Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4GD9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 60first strand
Strand 2
A
71 80anti-parallel
Strand 3
A
85 97anti-parallel
Strand 4
A
103 112anti-parallel
Strand 5
A
123 133anti-parallel
Strand 6
A
219 223anti-parallel
Strand 7
A
228 233anti-parallel
Strand 8
A
238 244anti-parallel
Strand 9
A
54 60anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 60first strand
Strand 2
B
71 80anti-parallel
Strand 3
B
85 97anti-parallel
Strand 4
B
103 112anti-parallel
Strand 5
B
123 134anti-parallel
Strand 6
B
219 223anti-parallel
Strand 7
B
228 233anti-parallel
Strand 8
B
238 244anti-parallel
Strand 9
B
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 60first strand
Strand 2
C
71 80anti-parallel
Strand 3
C
85 97anti-parallel
Strand 4
C
103 112anti-parallel
Strand 5
C
123 133anti-parallel
Strand 6
C
219 223anti-parallel
Strand 7
C
228 233anti-parallel
Strand 8
C
238 244anti-parallel
Strand 9
C
53 60anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 60first strand
Strand 2
D
71 80anti-parallel
Strand 3
D
85 97anti-parallel
Strand 4
D
103 112anti-parallel
Strand 5
D
123 132anti-parallel
Strand 6
D
219 223anti-parallel
Strand 7
D
228 233anti-parallel
Strand 8
D
238 244anti-parallel
Strand 9
D
54 60anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il