Analysis of interatomic Contacts of Structural Units in PDB entry:
4GDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GDN entry

There are 4 chains in PDB entry 4GDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 34ILE 369
B
 ARG 34ILE 369
C
 THR 33ILE 369
D
 ARG 34ILE 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 4GDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 55Right-handed alpha
Helix 2
2
A
95 97Right-handed 310
Helix 3
3
A
98 113Right-handed alpha
Helix 4
4
A
120 124Right-handed 310
Helix 5
5
A
140 146Right-handed alpha
Helix 6
6
A
171 177Right-handed alpha
Helix 7
7
A
191 207Right-handed alpha
Helix 8
8
A
209 218Right-handed alpha
Helix 9
9
A
258 260Right-handed 310
Helix 10
10
A
261 266Right-handed alpha
Helix 11
11
A
271 283Right-handed alpha
Helix 12
12
A
285 297Right-handed alpha
Helix 13
13
A
341 343Right-handed 310
Helix 14
14
A
356 368Right-handed alpha
Helix 15
15
B
42 55Right-handed alpha
Helix 16
16
B
95 97Right-handed 310
Helix 17
17
B
98 113Right-handed alpha
Helix 18
18
B
141 146Right-handed alpha
Helix 19
19
B
171 176Right-handed alpha
Helix 20
20
B
191 207Right-handed alpha
Helix 21
21
B
209 218Right-handed alpha
Helix 22
22
B
258 262Right-handed 310
Helix 23
23
B
271 283Right-handed alpha
Helix 24
24
B
289 296Right-handed alpha
Helix 25
25
B
356 368Right-handed alpha
Helix 26
26
C
42 55Right-handed alpha
Helix 27
27
C
95 97Right-handed 310
Helix 28
28
C
98 112Right-handed alpha
Helix 29
29
C
120 124Right-handed 310
Helix 30
30
C
140 146Right-handed alpha
Helix 31
31
C
171 177Right-handed alpha
Helix 32
32
C
191 207Right-handed alpha
Helix 33
33
C
209 218Right-handed alpha
Helix 34
34
C
258 260Right-handed 310
Helix 35
35
C
261 266Right-handed alpha
Helix 36
36
C
270 283Right-handed alpha
Helix 37
37
C
285 297Right-handed alpha
Helix 38
38
C
356 368Right-handed alpha
Helix 39
39
D
42 55Right-handed alpha
Helix 40
40
D
95 97Right-handed 310
Helix 41
41
D
98 112Right-handed alpha
Helix 42
42
D
120 125Right-handed alpha
Helix 43
43
D
140 146Right-handed alpha
Helix 44
44
D
171 175Right-handed 310
Helix 45
45
D
191 207Right-handed alpha
Helix 46
46
D
209 218Right-handed alpha
Helix 47
47
D
258 262Right-handed 310
Helix 48
48
D
271 283Right-handed alpha
Helix 49
49
D
285 296Right-handed alpha
Helix 50
50
D
341 343Right-handed 310
Helix 51
51
D
356 367Right-handed alpha
Back to top of page

There are 19 sheets in PDB entry 4GDN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
68 79anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
345 351anti-parallel
Strand 5
A
334 340anti-parallel
Strand 6
A
323 329anti-parallel
Strand 7
A
315 318anti-parallel
Strand 8
A
310 312anti-parallel
Strand 9
A
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
267 270anti-parallel
Strand 3
A
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
135 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
71 79anti-parallel
Strand 3
B
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
71 79anti-parallel
Strand 3
B
58 65anti-parallel
Strand 4
B
345 351anti-parallel
Strand 5
B
333 340anti-parallel
Strand 6
B
323 330anti-parallel
Strand 7
B
316 318anti-parallel
Strand 8
B
310 311anti-parallel
Strand 9
B
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
267 270anti-parallel
Strand 3
B
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
135 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 246first strand
Strand 2
B
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
68 79anti-parallel
Strand 3
C
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
68 79anti-parallel
Strand 3
C
58 65anti-parallel
Strand 4
C
345 351anti-parallel
Strand 5
C
334 340anti-parallel
Strand 6
C
323 329anti-parallel
Strand 7
C
315 318anti-parallel
Strand 8
C
310 312anti-parallel
Strand 9
C
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
267 269anti-parallel
Strand 3
C
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
135 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 246first strand
Strand 2
C
249 252anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
68 79anti-parallel
Strand 3
D
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
68 79anti-parallel
Strand 3
D
58 65anti-parallel
Strand 4
D
345 351anti-parallel
Strand 5
D
334 340anti-parallel
Strand 6
D
323 329anti-parallel
Strand 7
D
316 318anti-parallel
Strand 8
D
310 311anti-parallel
Strand 9
D
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 93first strand
Strand 2
D
267 270anti-parallel
Strand 3
D
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 132first strand
Strand 2
D
135 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
243 246first strand
Strand 2
D
249 252anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il