Analysis of interatomic Contacts of Structural Units in PDB entry:
4GDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GDO entry

There are 6 chains in PDB entry 4GDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1379LEU 1420
B
 HIS 1380LEU 1420
C
 ALA 1383LEU 1420
D
 HIS 1380LEU 1420
E
 ALA 1390LEU 1420
F
 ARG 1388ALA 1417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4GDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1382 1418Right-handed alpha
Helix 2
2
B
1382 1418Right-handed alpha
Helix 3
3
C
1384 1418Right-handed alpha
Helix 4
4
D
1381 1420Right-handed alpha
Helix 5
5
E
1391 1420Right-handed alpha
Helix 6
6
F
1389 1417Right-handed alpha
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There are no sheets in PDB entry 4GDO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il