Analysis of interatomic Contacts of Structural Units in PDB entry:
4GDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GDZ entry

There is 1 chain in PDB entry 4GDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 48TRP 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4GDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 66Right-handed alpha
Helix 2
2
A
86 89Right-handed 310
Helix 3
3
A
111 113Right-handed 310
Helix 4
4
A
188 193Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4GDZ.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
67 76anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
162 169anti-parallel
Strand 5
A
149 156anti-parallel
Strand 6
A
137 144anti-parallel
Strand 7
A
115 131anti-parallel
Strand 8
A
98 106anti-parallel
Strand 9
A
91 95anti-parallel
Strand 10
A
67 76anti-parallel
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