Analysis of interatomic Contacts of Structural Units in PDB entry:
4GED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GED entry

There are 2 chains in PDB entry 4GED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34SER 301
B
 GLY 12LYS 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4GED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 55Right-handed alpha
Helix 2
2
A
57 71Right-handed alpha
Helix 3
3
A
85 89Right-handed 310
Helix 4
4
A
91 99Right-handed 310
Helix 5
5
A
101 115Right-handed alpha
Helix 6
6
A
119 135Right-handed alpha
Helix 7
7
A
151 155Right-handed 310
Helix 8
8
A
167 179Right-handed alpha
Helix 9
9
A
181 190Right-handed alpha
Helix 10
10
A
191 194Right-handed 310
Helix 11
11
A
198 203Right-handed alpha
Helix 12
12
A
217 226Right-handed alpha
Helix 13
13
A
250 259Right-handed alpha
Helix 14
14
A
259 272Right-handed alpha
Helix 15
15
A
272 288Right-handed alpha
Helix 16
16
B
13 25Right-handed alpha
Helix 17
17
B
60 66Right-handed alpha
Helix 18
18
B
71 81Right-handed alpha
Helix 19
19
B
81 86Right-handed alpha
Helix 20
20
B
98 111Right-handed alpha
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There are 3 sheets in PDB entry 4GED. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
206 207anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
239 241anti-parallel
Strand 3
A
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il