Analysis of interatomic Contacts of Structural Units in PDB entry:
4GEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GEE entry

There is 1 chain in PDB entry 4GEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18HIS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4GEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 25Right-handed alpha
Helix 2
2
A
25 31Right-handed alpha
Helix 3
3
A
34 55Right-handed alpha
Helix 4
4
A
91 99Right-handed alpha
Helix 5
5
A
121 128Right-handed alpha
Helix 6
6
A
185 200Right-handed alpha
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There are 2 sheets in PDB entry 4GEE. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
157 161anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
71 75anti-parallel
Strand 6
A
60 65anti-parallel
Strand 7
A
204 209parallel
Strand 8
A
216 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il