Analysis of interatomic Contacts of Structural Units in PDB entry:
4GER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GER entry

There are 2 chains in PDB entry 4GER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 304
B
 ALA 1ASN 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4GER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 82Right-handed alpha
Helix 2
2
A
125 128Right-handed 310
Helix 3
3
A
129 144Right-handed alpha
Helix 4
4
A
151 171Right-handed alpha
Helix 5
5
A
177 181Right-handed 310
Helix 6
6
A
195 200Right-handed 310
Helix 7
7
A
204 208Right-handed 310
Helix 8
8
A
212 235Right-handed alpha
Helix 9
9
A
247 262Right-handed alpha
Helix 10
10
A
268 285Right-handed alpha
Helix 11
11
A
288 302Right-handed alpha
Helix 12
12
B
60 82Right-handed alpha
Helix 13
13
B
125 128Right-handed 310
Helix 14
14
B
129 144Right-handed alpha
Helix 15
15
B
151 171Right-handed alpha
Helix 16
16
B
195 200Right-handed 310
Helix 17
17
B
204 208Right-handed 310
Helix 18
18
B
212 235Right-handed alpha
Helix 19
19
B
247 262Right-handed alpha
Helix 20
20
B
268 285Right-handed alpha
Helix 21
21
B
288 302Right-handed alpha
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There are 12 sheets in PDB entry 4GER. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
57 58parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
23 25anti-parallel
Strand 3
A
52 53anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
49 50anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
93 99parallel
Strand 4
A
113 116parallel
Strand 5
A
106 108anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
191 192anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
241 243anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
57 58parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
23 25anti-parallel
Strand 3
B
52 53anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
49 50anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
93 99parallel
Strand 4
B
113 116parallel
Strand 5
B
106 108anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
191 192anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
241 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il