Analysis of interatomic Contacts of Structural Units in PDB entry:
4GEW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GEW entry

There is 1 chain in PDB entry 4GEW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ALA 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4GEW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 57Right-handed alpha
Helix 2
2
A
59 67Right-handed alpha
Helix 3
3
A
73 84Right-handed alpha
Helix 4
4
A
87 96Right-handed alpha
Helix 5
5
A
134 150Right-handed alpha
Helix 6
6
A
164 169Right-handed alpha
Helix 7
7
A
170 172Right-handed 310
Helix 8
8
A
236 238Right-handed 310
Helix 9
9
A
239 261Right-handed alpha
Helix 10
10
A
275 279Right-handed 310
Helix 11
11
A
289 293Right-handed alpha
Helix 12
12
A
296 300Right-handed 310
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There are 3 sheets in PDB entry 4GEW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
186 192anti-parallel
Strand 3
A
153 159anti-parallel
Strand 4
A
119 126parallel
Strand 5
A
355 361anti-parallel
Strand 6
A
332 338anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 204first strand
Strand 2
A
213 221anti-parallel
Strand 3
A
224 232anti-parallel
Strand 4
A
265 271parallel
Strand 5
A
322 327anti-parallel
Strand 6
A
287 288anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il