Analysis of interatomic Contacts of Structural Units in PDB entry:
4GF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GF4 entry

There is 1 chain in PDB entry 4GF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4PHE 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 4GF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 69Right-handed alpha
Helix 2
2
A
126 128Right-handed 310
Helix 3
3
A
138 142Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 4GF4. Click on sheet of interest to get list of strands forming it: A, B,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
48 64anti-parallel
Strand 4
A
27 40anti-parallel
Strand 5
A
410 420anti-parallel
Strand 6
A
389 399anti-parallel
Strand 7
A
372 386anti-parallel
Strand 8
A
332 342anti-parallel
Strand 9
A
312 322anti-parallel
Strand 10
A
294 305anti-parallel
Strand 11
A
274 283anti-parallel
Strand 12
A
233 243anti-parallel
Strand 13
A
229 230anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
48 64anti-parallel
Strand 4
A
74 84anti-parallel
Strand 5
A
112 124anti-parallel
Strand 6
A
130 137anti-parallel
Strand 7
A
174 185anti-parallel
Strand 8
A
188 195anti-parallel
Strand 9
A
220 226anti-parallel
Strand 10
A
233 243anti-parallel
Strand 11
A
229 230anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il