Analysis of interatomic Contacts of Structural Units in PDB entry:
4GFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GFA entry

There are 4 chains in PDB entry 4GFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3TYR 157
B
 SER 3TYR 157
C
 LYS 4PHE 156
D
 ILE 5PHE 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4GFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 81Right-handed alpha
Helix 2
2
A
89 100Right-handed alpha
Helix 3
3
A
135 156Right-handed alpha
Helix 4
4
B
71 81Right-handed alpha
Helix 5
5
B
89 100Right-handed alpha
Helix 6
6
B
135 154Right-handed alpha
Helix 7
7
C
70 81Right-handed alpha
Helix 8
8
C
89 100Right-handed alpha
Helix 9
9
C
135 156Right-handed alpha
Helix 10
10
D
70 81Right-handed alpha
Helix 11
11
D
89 100Right-handed alpha
Helix 12
12
D
135 156Right-handed alpha
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There are 4 sheets in PDB entry 4GFA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 17first strand
Strand 2
A
30 42anti-parallel
Strand 3
A
49 57anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
126 132anti-parallel
Strand 6
A
115 120anti-parallel
Strand 7
A
105 109anti-parallel
Strand 8
A
5 17parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 19first strand
Strand 2
B
27 42anti-parallel
Strand 3
B
49 57anti-parallel
Strand 4
B
64 70anti-parallel
Strand 5
B
126 132anti-parallel
Strand 6
B
115 120anti-parallel
Strand 7
B
105 109anti-parallel
Strand 8
B
5 19parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 19first strand
Strand 2
C
27 42anti-parallel
Strand 3
C
49 57anti-parallel
Strand 4
C
64 69anti-parallel
Strand 5
C
127 132anti-parallel
Strand 6
C
115 120anti-parallel
Strand 7
C
105 109anti-parallel
Strand 8
C
5 19parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 19first strand
Strand 2
D
27 40anti-parallel
Strand 3
D
51 57anti-parallel
Strand 4
D
64 69anti-parallel
Strand 5
D
127 132anti-parallel
Strand 6
D
115 120anti-parallel
Strand 7
D
105 109anti-parallel
Strand 8
D
6 19parallel
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