Analysis of interatomic Contacts of Structural Units in PDB entry:
4GFH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GFH entry

There are 5 chains in PDB entry 4GFH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	ARG 781
A	ILE 783	ARG 1177
B	DC 1	DC 11
C	DC 1	DG 15
F	SER 7	SER 7

There are 84 helices in PDB entry 4GFH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	12	Right-handed alpha
Helix 2	2	A	16	24	Right-handed alpha
Helix 3	3	A	25	28	Right-handed 310
Helix 4	4	A	57	78	Right-handed alpha
Helix 5	5	A	115	123	Right-handed alpha
Helix 6	6	A	144	152	Right-handed alpha
Helix 7	7	A	202	207	Right-handed alpha
Helix 8	8	A	212	230	Right-handed alpha
Helix 9	9	A	246	252	Right-handed alpha
Helix 10	10	A	253	255	Right-handed 310
Helix 11	11	A	315	336	Right-handed alpha
Helix 12	12	A	341	347	Right-handed alpha
Helix 13	13	A	373	377	Right-handed 310
Helix 14	14	A	384	392	Right-handed alpha
Helix 15	15	A	394	405	Right-handed alpha
Helix 16	16	A	450	465	Right-handed alpha
Helix 17	17	A	485	492	Right-handed alpha
Helix 18	18	A	492	502	Right-handed alpha
Helix 19	19	A	512	516	Right-handed 310
Helix 20	20	A	528	546	Right-handed alpha
Helix 21	21	A	580	591	Right-handed alpha
Helix 22	22	A	592	595	Right-handed 310
Helix 23	23	A	609	619	Right-handed alpha
Helix 24	24	A	634	643	Right-handed alpha
Helix 25	25	A	646	657	Right-handed alpha
Helix 26	26	A	672	679	Right-handed alpha
Helix 27	27	A	679	692	Right-handed alpha
Helix 28	28	A	700	713	Right-handed alpha
Helix 29	29	A	721	732	Right-handed alpha
Helix 30	30	A	737	750	Right-handed alpha
Helix 31	31	A	790	795	Right-handed alpha
Helix 32	32	A	796	800	Right-handed 310
Helix 33	33	A	845	858	Right-handed alpha
Helix 34	34	A	908	922	Right-handed alpha
Helix 35	35	A	948	959	Right-handed alpha
Helix 36	36	A	959	964	Right-handed alpha
Helix 37	37	A	989	1035	Right-handed alpha
Helix 38	38	A	1044	1055	Right-handed alpha
Helix 39	39	A	1113	1118	Right-handed alpha
Helix 40	40	A	1120	1124	Right-handed 310
Helix 41	41	A	1125	1148	Right-handed alpha
Helix 42	42	A	1150	1176	Right-handed alpha
Helix 43	43	F	8	12	Right-handed alpha
Helix 44	44	F	16	24	Right-handed alpha
Helix 45	45	F	25	28	Right-handed 310
Helix 46	46	F	57	78	Right-handed alpha
Helix 47	47	F	115	123	Right-handed alpha
Helix 48	48	F	144	152	Right-handed alpha
Helix 49	49	F	202	207	Right-handed alpha
Helix 50	50	F	212	230	Right-handed alpha
Helix 51	51	F	246	252	Right-handed alpha
Helix 52	52	F	253	255	Right-handed 310
Helix 53	53	F	315	336	Right-handed alpha
Helix 54	54	F	341	347	Right-handed alpha
Helix 55	55	F	373	377	Right-handed 310
Helix 56	56	F	384	392	Right-handed alpha
Helix 57	57	F	394	404	Right-handed alpha
Helix 58	58	F	450	465	Right-handed alpha
Helix 59	59	F	485	492	Right-handed alpha
Helix 60	60	F	492	502	Right-handed alpha
Helix 61	61	F	512	516	Right-handed 310
Helix 62	62	F	528	546	Right-handed alpha
Helix 63	63	F	580	591	Right-handed alpha
Helix 64	64	F	592	595	Right-handed 310
Helix 65	65	F	609	619	Right-handed alpha
Helix 66	66	F	634	643	Right-handed alpha
Helix 67	67	F	646	657	Right-handed alpha
Helix 68	68	F	672	679	Right-handed alpha
Helix 69	69	F	679	692	Right-handed alpha
Helix 70	70	F	700	713	Right-handed alpha
Helix 71	71	F	721	732	Right-handed alpha
Helix 72	72	F	737	750	Right-handed alpha
Helix 73	73	F	790	795	Right-handed alpha
Helix 74	74	F	796	800	Right-handed 310
Helix 75	75	F	845	858	Right-handed alpha
Helix 76	76	F	908	922	Right-handed alpha
Helix 77	77	F	948	959	Right-handed alpha
Helix 78	78	F	959	964	Right-handed alpha
Helix 79	79	F	989	1035	Right-handed alpha
Helix 80	80	F	1044	1055	Right-handed alpha
Helix 81	81	F	1113	1118	Right-handed alpha
Helix 82	82	F	1120	1124	Right-handed 310
Helix 83	83	F	1125	1148	Right-handed alpha
Helix 84	84	F	1150	1176	Right-handed alpha

There are 30 sheets in PDB entry 4GFH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	F	126	127	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	43	first strand
Strand 2	A	48	56	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	184	187	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	153	162	anti-parallel
Strand 4	A	195	201	anti-parallel
Strand 5	A	94	99	anti-parallel
Strand 6	A	83	89	anti-parallel
Strand 7	A	234	237	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	F	13	14	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	285	first strand
Strand 2	A	288	294	anti-parallel
Strand 3	A	349	355	anti-parallel
Strand 4	A	300	305	parallel
Strand 5	A	309	310	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	369	370	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	474	first strand
Strand 2	A	444	449	parallel
Strand 3	A	520	524	parallel
Strand 4	A	556	559	parallel
Strand 5	A	624	628	anti-parallel
Strand 6	A	669	671	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	578	first strand
Strand 2	A	564	568	anti-parallel
Strand 3	A	597	601	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	784	785	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	808	first strand
Strand 2	A	811	815	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	833	first strand
Strand 2	A	838	841	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	878	first strand
Strand 2	A	884	887	anti-parallel
Strand 3	A	967	970	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	894	first strand
Strand 2	A	897	902	anti-parallel
Strand 3	A	943	946	anti-parallel
Strand 4	A	932	935	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	978	first strand
Strand 2	A	984	986	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1059	1060	first strand
Strand 2	A	1066	1067	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	43	first strand
Strand 2	F	48	56	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	167	174	anti-parallel
Strand 3	F	184	187	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	167	174	anti-parallel
Strand 3	F	153	162	anti-parallel
Strand 4	F	195	201	anti-parallel
Strand 5	F	94	99	anti-parallel
Strand 6	F	83	89	anti-parallel
Strand 7	F	234	237	parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	285	first strand
Strand 2	F	288	294	anti-parallel
Strand 3	F	349	355	anti-parallel
Strand 4	F	300	305	parallel
Strand 5	F	309	310	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	314	first strand
Strand 2	F	369	370	parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	469	474	first strand
Strand 2	F	444	449	parallel
Strand 3	F	520	524	parallel
Strand 4	F	556	559	parallel
Strand 5	F	624	628	anti-parallel
Strand 6	F	669	671	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	575	578	first strand
Strand 2	F	564	568	anti-parallel
Strand 3	F	597	601	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	719	720	first strand
Strand 2	F	784	785	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	805	808	first strand
Strand 2	F	811	815	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	830	833	first strand
Strand 2	F	838	841	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	875	878	first strand
Strand 2	F	884	887	anti-parallel
Strand 3	F	967	970	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	889	894	first strand
Strand 2	F	897	902	anti-parallel
Strand 3	F	943	946	anti-parallel
Strand 4	F	932	935	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	976	978	first strand
Strand 2	F	984	986	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1059	1060	first strand
Strand 2	F	1066	1067	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GFH

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GFH