Analysis of interatomic Contacts of Structural Units in PDB entry:
4GFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GFP entry

There is 1 chain in PDB entry 4GFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2VAL 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4GFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 34Right-handed alpha
Helix 2
2
A
46 59Right-handed alpha
Helix 3
3
A
67 70Right-handed 310
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
125 135Right-handed alpha
Helix 6
6
A
167 179Right-handed alpha
Helix 7
7
A
195 204Right-handed alpha
Helix 8
8
A
233 247Right-handed alpha
Helix 9
9
A
260 263Right-handed 310
Helix 10
10
A
264 274Right-handed alpha
Helix 11
11
A
306 310Right-handed 310
Helix 12
12
A
316 326Right-handed alpha
Helix 13
13
A
340 357Right-handed alpha
Helix 14
14
A
385 399Right-handed alpha
Helix 15
15
A
414 425Right-handed alpha
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There are 6 sheets in PDB entry 4GFP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
403 405parallel
Strand 3
A
3 6anti-parallel
Strand 4
A
428 430anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
251 258parallel
Strand 3
A
290 296anti-parallel
Strand 4
A
276 280anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
228 229parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
111 115parallel
Strand 3
A
148 151anti-parallel
Strand 4
A
138 140anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
183 188parallel
Strand 3
A
216 219anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 334first strand
Strand 2
A
367 371anti-parallel
Strand 3
A
361 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il