Analysis of interatomic Contacts of Structural Units in PDB entry:
4GFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GFV entry

There are 6 chains in PDB entry 4GFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6CYS 293
B
 SER 7THR 295
E
 PRO 1194GLU 1195
E
 LEU 1197PRO 1199
F
 PRO 1194GLU 1195
F
 LEU 1197THR 1198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4GFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
19 22Right-handed 310
Helix 3
3
A
23 43Right-handed alpha
Helix 4
4
A
48 53Right-handed alpha
Helix 5
5
A
56 60Right-handed 310
Helix 6
6
A
68 72Right-handed 310
Helix 7
7
A
78 82Right-handed 310
Helix 8
8
A
111 122Right-handed alpha
Helix 9
9
A
205 219Right-handed alpha
Helix 10
10
A
233 252Right-handed alpha
Helix 11
11
A
259 271Right-handed alpha
Helix 12
12
A
277 293Right-handed alpha
Helix 13
13
B
9 18Right-handed alpha
Helix 14
14
B
21 43Right-handed alpha
Helix 15
15
B
48 53Right-handed alpha
Helix 16
16
B
56 60Right-handed 310
Helix 17
17
B
68 72Right-handed 310
Helix 18
18
B
78 82Right-handed 310
Helix 19
19
B
111 122Right-handed alpha
Helix 20
20
B
204 219Right-handed alpha
Helix 21
21
B
233 252Right-handed alpha
Helix 22
22
B
259 269Right-handed alpha
Helix 23
23
B
277 292Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4GFV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
225 228parallel
Strand 4
A
126 129parallel
Strand 5
A
183 192parallel
Strand 6
A
171 180anti-parallel
Strand 7
A
157 168anti-parallel
Strand 8
A
152 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 93first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
225 228parallel
Strand 4
B
126 129parallel
Strand 5
B
183 192parallel
Strand 6
B
171 180anti-parallel
Strand 7
B
157 168anti-parallel
Strand 8
B
152 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
138 139anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il