Analysis of interatomic Contacts of Structural Units in PDB entry:
4GG2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GG2 entry

There are 2 chains in PDB entry 4GG2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 33THR 375
B
 THR 381TYR 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4GG2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 60Right-handed alpha
Helix 2
2
A
63 79Right-handed alpha
Helix 3
3
A
121 127Right-handed alpha
Helix 4
4
A
128 132Right-handed 310
Helix 5
5
A
136 149Right-handed alpha
Helix 6
6
A
152 167Right-handed alpha
Helix 7
7
A
171 181Right-handed alpha
Helix 8
8
A
181 188Right-handed alpha
Helix 9
9
A
188 195Right-handed alpha
Helix 10
10
A
210 224Right-handed alpha
Helix 11
11
A
225 230Right-handed alpha
Helix 12
12
A
233 244Right-handed alpha
Helix 13
13
A
249 256Right-handed alpha
Helix 14
14
A
282 295Right-handed alpha
Helix 15
15
A
299 304Right-handed 310
Helix 16
16
A
305 328Right-handed alpha
Helix 17
17
A
338 346Right-handed alpha
Helix 18
18
A
347 356Right-handed alpha
Helix 19
19
A
365 370Right-handed 310
Helix 20
20
B
419 424Right-handed 310
Helix 21
21
B
438 442Right-handed 310
Helix 22
22
B
476 490Right-handed alpha
Helix 23
23
B
494 501Right-handed alpha
Helix 24
24
B
520 530Right-handed alpha
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There are 5 sheets in PDB entry 4GG2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
B
553 557anti-parallel
Strand 3
B
543 550anti-parallel
Strand 4
B
465 472anti-parallel
Strand 5
B
456 460anti-parallel
Strand 6
A
272 276anti-parallel
Strand 7
A
265 269anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
100 106anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
B
393 399anti-parallel
Strand 5
B
382 387anti-parallel
Strand 6
A
42 44anti-parallel
Strand 7
B
567 568anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
207 208anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
200 201anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 505first strand
Strand 2
B
513 515anti-parallel
Strand 3
B
534 536parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il