Analysis of interatomic Contacts of Structural Units in PDB entry:
4GGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GGB entry

There is 1 chain in PDB entry 4GGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4GGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 67Right-handed alpha
Helix 2
2
A
73 85Right-handed alpha
Helix 3
3
A
86 89Right-handed 310
Helix 4
4
A
90 114Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
144 158Right-handed alpha
Helix 7
7
A
170 186Right-handed alpha
Helix 8
8
A
200 212Right-handed alpha
Helix 9
9
A
213 215Right-handed 310
Helix 10
10
A
227 238Right-handed alpha
Helix 11
11
A
250 261Right-handed alpha
Helix 12
12
A
274 289Right-handed alpha
Helix 13
13
A
300 314Right-handed alpha
Helix 14
14
A
334 340Right-handed alpha
Helix 15
15
A
366 370Right-handed 310
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There are 3 sheets in PDB entry 4GGB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
371 373anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
265 266parallel
Strand 3
A
242 244parallel
Strand 4
A
218 220parallel
Strand 5
A
190 194parallel
Strand 6
A
162 166parallel
Strand 7
A
128 134parallel
Strand 8
A
327 330parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
265 266parallel
Strand 3
A
242 244parallel
Strand 4
A
218 220parallel
Strand 5
A
190 194parallel
Strand 6
A
162 166parallel
Strand 7
A
128 134parallel
Strand 8
A
352 354anti-parallel
Strand 9
A
348 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il