Analysis of interatomic Contacts of Structural Units in PDB entry:
4GGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GGH entry

There are 4 chains in PDB entry 4GGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 399
B
 LYS 3PRO 399
C
 LYS 3PRO 399
D
 LYS 3TYR 54
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 4GGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 54Right-handed alpha
Helix 2
2
A
54 60Right-handed alpha
Helix 3
3
A
66 76Right-handed alpha
Helix 4
4
A
83 106Right-handed alpha
Helix 5
5
A
108 114Right-handed alpha
Helix 6
6
A
131 145Right-handed alpha
Helix 7
7
A
177 197Right-handed alpha
Helix 8
8
A
211 223Right-handed alpha
Helix 9
9
A
224 226Right-handed 310
Helix 10
10
A
235 240Right-handed 310
Helix 11
11
A
241 247Right-handed alpha
Helix 12
12
A
261 264Right-handed 310
Helix 13
13
A
265 271Right-handed alpha
Helix 14
14
A
280 285Right-handed 310
Helix 15
15
A
286 300Right-handed alpha
Helix 16
16
A
313 327Right-handed alpha
Helix 17
17
A
339 346Right-handed alpha
Helix 18
18
A
370 376Right-handed alpha
Helix 19
19
A
384 387Right-handed 310
Helix 20
20
B
43 54Right-handed alpha
Helix 21
21
B
54 60Right-handed alpha
Helix 22
22
B
66 77Right-handed alpha
Helix 23
23
B
83 106Right-handed alpha
Helix 24
24
B
108 114Right-handed alpha
Helix 25
25
B
131 146Right-handed alpha
Helix 26
26
B
177 197Right-handed alpha
Helix 27
27
B
211 223Right-handed alpha
Helix 28
28
B
224 226Right-handed 310
Helix 29
29
B
235 240Right-handed 310
Helix 30
30
B
241 247Right-handed alpha
Helix 31
31
B
261 264Right-handed 310
Helix 32
32
B
265 271Right-handed alpha
Helix 33
33
B
280 285Right-handed alpha
Helix 34
34
B
286 301Right-handed alpha
Helix 35
35
B
313 327Right-handed alpha
Helix 36
36
B
339 346Right-handed alpha
Helix 37
37
B
370 375Right-handed alpha
Helix 38
38
B
384 387Right-handed 310
Helix 39
39
C
43 54Right-handed alpha
Helix 40
40
C
54 60Right-handed alpha
Helix 41
41
C
66 77Right-handed alpha
Helix 42
42
C
83 105Right-handed alpha
Helix 43
43
C
108 114Right-handed alpha
Helix 44
44
C
131 145Right-handed alpha
Helix 45
45
C
177 197Right-handed alpha
Helix 46
46
C
211 223Right-handed alpha
Helix 47
47
C
224 226Right-handed 310
Helix 48
48
C
235 240Right-handed 310
Helix 49
49
C
241 247Right-handed alpha
Helix 50
50
C
261 264Right-handed 310
Helix 51
51
C
265 271Right-handed alpha
Helix 52
52
C
280 285Right-handed 310
Helix 53
53
C
286 300Right-handed alpha
Helix 54
54
C
313 327Right-handed alpha
Helix 55
55
C
339 346Right-handed alpha
Helix 56
56
C
370 376Right-handed alpha
Helix 57
57
C
384 387Right-handed 310
Helix 58
58
D
43 54Right-handed alpha
Helix 59
59
D
54 60Right-handed alpha
Helix 60
60
D
66 77Right-handed alpha
Helix 61
61
D
83 106Right-handed alpha
Helix 62
62
D
108 114Right-handed alpha
Helix 63
63
D
131 145Right-handed alpha
Helix 64
64
D
177 197Right-handed alpha
Helix 65
65
D
211 223Right-handed alpha
Helix 66
66
D
224 226Right-handed 310
Helix 67
67
D
235 240Right-handed 310
Helix 68
68
D
241 247Right-handed alpha
Helix 69
69
D
261 264Right-handed 310
Helix 70
70
D
265 271Right-handed alpha
Helix 71
71
D
280 284Right-handed 310
Helix 72
72
D
286 301Right-handed alpha
Helix 73
73
D
313 327Right-handed alpha
Helix 74
74
D
339 346Right-handed alpha
Helix 75
75
D
370 376Right-handed alpha
Helix 76
76
D
384 387Right-handed 310
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There are 16 sheets in PDB entry 4GGH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 14first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
33 37anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
276 277parallel
Strand 3
A
253 255parallel
Strand 4
A
229 231parallel
Strand 5
A
201 205parallel
Strand 6
A
149 154parallel
Strand 7
A
121 129parallel
Strand 8
A
333 334parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
276 277parallel
Strand 3
A
253 255parallel
Strand 4
A
229 231parallel
Strand 5
A
201 205parallel
Strand 6
A
149 154parallel
Strand 7
A
121 129parallel
Strand 8
A
356 357anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
389 390parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 14first strand
Strand 2
B
21 28anti-parallel
Strand 3
B
34 37anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
276 277parallel
Strand 3
B
253 255parallel
Strand 4
B
229 231parallel
Strand 5
B
201 205parallel
Strand 6
B
149 154parallel
Strand 7
B
121 129parallel
Strand 8
B
332 334parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
276 277parallel
Strand 3
B
253 255parallel
Strand 4
B
229 231parallel
Strand 5
B
201 205parallel
Strand 6
B
149 154parallel
Strand 7
B
121 129parallel
Strand 8
B
356 357anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
389 390parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 14first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
33 37anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
303 304first strand
Strand 2
C
276 277parallel
Strand 3
C
253 255parallel
Strand 4
C
229 231parallel
Strand 5
C
201 205parallel
Strand 6
C
149 154parallel
Strand 7
C
121 129parallel
Strand 8
C
333 334parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
303 304first strand
Strand 2
C
276 277parallel
Strand 3
C
253 255parallel
Strand 4
C
229 231parallel
Strand 5
C
201 205parallel
Strand 6
C
149 154parallel
Strand 7
C
121 129parallel
Strand 8
C
356 357anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 175first strand
Strand 2
C
389 390parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 14first strand
Strand 2
D
21 28anti-parallel
Strand 3
D
33 37anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
303 304first strand
Strand 2
D
276 277parallel
Strand 3
D
253 255parallel
Strand 4
D
229 231parallel
Strand 5
D
201 205parallel
Strand 6
D
149 154parallel
Strand 7
D
121 129parallel
Strand 8
D
333 334parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
303 304first strand
Strand 2
D
276 277parallel
Strand 3
D
253 255parallel
Strand 4
D
229 231parallel
Strand 5
D
201 205parallel
Strand 6
D
149 154parallel
Strand 7
D
121 129parallel
Strand 8
D
356 357anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 175first strand
Strand 2
D
389 390parallel
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