Analysis of interatomic Contacts of Structural Units in PDB entry:
4GGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GGM entry

There is 1 chain in PDB entry 4GGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MSE 1GLN 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4GGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
12 24Right-handed alpha
Helix 2
2
X
38 42Right-handed 310
Helix 3
3
X
53 64Right-handed alpha
Helix 4
4
X
92 101Right-handed alpha
Helix 5
5
X
103 119Right-handed alpha
Helix 6
6
X
124 131Right-handed alpha
Helix 7
7
X
145 165Right-handed alpha
Helix 8
8
X
186 196Right-handed alpha
Helix 9
9
X
198 202Right-handed 310
Helix 10
10
X
230 240Right-handed alpha
Helix 11
11
X
256 268Right-handed alpha
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There are 3 sheets in PDB entry 4GGM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
46 49first strand
Strand 2
X
28 33parallel
Strand 3
X
4 8parallel
Strand 4
X
68 72parallel
Strand 5
X
121 123parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
137 138first strand
Strand 2
X
270 274anti-parallel
Strand 3
X
244 248parallel
Strand 4
X
211 214parallel
Strand 5
X
170 174anti-parallel
Strand 6
X
177 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
228 229first strand
Strand 2
X
253 254parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il