Analysis of interatomic Contacts of Structural Units in PDB entry:
4GGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GGP entry

There are 4 chains in PDB entry 4GGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 397
B
 MSE 1ILE 397
C
 MSE 1ILE 397
D
 MSE 1ILE 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 4GGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 35Right-handed alpha
Helix 2
2
A
36 41Right-handed alpha
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
90 107Right-handed alpha
Helix 5
5
A
119 134Right-handed alpha
Helix 6
6
A
190 202Right-handed alpha
Helix 7
7
A
203 216Right-handed alpha
Helix 8
8
A
233 235Right-handed 310
Helix 9
9
A
236 241Right-handed alpha
Helix 10
10
A
243 263Right-handed alpha
Helix 11
11
A
280 284Right-handed 310
Helix 12
12
A
286 302Right-handed alpha
Helix 13
13
A
306 318Right-handed alpha
Helix 14
14
A
342 356Right-handed alpha
Helix 15
15
A
360 365Right-handed alpha
Helix 16
16
A
366 377Right-handed alpha
Helix 17
17
B
16 35Right-handed alpha
Helix 18
18
B
36 41Right-handed alpha
Helix 19
19
B
56 71Right-handed alpha
Helix 20
20
B
90 106Right-handed alpha
Helix 21
21
B
119 134Right-handed alpha
Helix 22
22
B
190 202Right-handed alpha
Helix 23
23
B
203 216Right-handed alpha
Helix 24
24
B
236 241Right-handed alpha
Helix 25
25
B
243 263Right-handed alpha
Helix 26
26
B
286 302Right-handed alpha
Helix 27
27
B
306 318Right-handed alpha
Helix 28
28
B
342 354Right-handed alpha
Helix 29
29
B
360 365Right-handed alpha
Helix 30
30
B
366 377Right-handed alpha
Helix 31
31
C
16 35Right-handed alpha
Helix 32
32
C
36 41Right-handed alpha
Helix 33
33
C
56 71Right-handed alpha
Helix 34
34
C
90 106Right-handed alpha
Helix 35
35
C
119 134Right-handed alpha
Helix 36
36
C
190 202Right-handed alpha
Helix 37
37
C
203 216Right-handed alpha
Helix 38
38
C
233 235Right-handed 310
Helix 39
39
C
236 241Right-handed alpha
Helix 40
40
C
243 262Right-handed alpha
Helix 41
41
C
280 284Right-handed 310
Helix 42
42
C
286 302Right-handed alpha
Helix 43
43
C
306 318Right-handed alpha
Helix 44
44
C
342 356Right-handed alpha
Helix 45
45
C
360 365Right-handed alpha
Helix 46
46
C
366 377Right-handed alpha
Helix 47
47
D
16 35Right-handed alpha
Helix 48
48
D
36 41Right-handed alpha
Helix 49
49
D
56 71Right-handed alpha
Helix 50
50
D
90 107Right-handed alpha
Helix 51
51
D
119 134Right-handed alpha
Helix 52
52
D
190 202Right-handed alpha
Helix 53
53
D
203 216Right-handed alpha
Helix 54
54
D
233 235Right-handed 310
Helix 55
55
D
236 241Right-handed alpha
Helix 56
56
D
243 263Right-handed alpha
Helix 57
57
D
280 284Right-handed 310
Helix 58
58
D
286 302Right-handed alpha
Helix 59
59
D
306 318Right-handed alpha
Helix 60
60
D
342 354Right-handed alpha
Helix 61
61
D
360 365Right-handed alpha
Helix 62
62
D
366 377Right-handed alpha
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There are 16 sheets in PDB entry 4GGP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 12anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
73 78parallel
Strand 3
A
48 52parallel
Strand 4
A
137 142parallel
Strand 5
A
219 229parallel
Strand 6
A
266 272parallel
Strand 7
A
334 335parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
157 159anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
181 186anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
11 12anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 114first strand
Strand 2
B
73 78parallel
Strand 3
B
48 52parallel
Strand 4
B
137 142parallel
Strand 5
B
219 229parallel
Strand 6
B
266 272parallel
Strand 7
B
334 335parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
157 159anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 174first strand
Strand 2
B
181 186anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
11 12anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 114first strand
Strand 2
C
73 78parallel
Strand 3
C
48 52parallel
Strand 4
C
137 142parallel
Strand 5
C
219 229parallel
Strand 6
C
267 272parallel
Strand 7
C
334 335parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 150first strand
Strand 2
C
157 159anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 174first strand
Strand 2
C
181 186anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 8first strand
Strand 2
D
11 12anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 114first strand
Strand 2
D
73 78parallel
Strand 3
D
48 52parallel
Strand 4
D
137 142parallel
Strand 5
D
219 229parallel
Strand 6
D
266 272parallel
Strand 7
D
334 335parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 150first strand
Strand 2
D
157 159anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 174first strand
Strand 2
D
181 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il