Analysis of interatomic Contacts of Structural Units in PDB entry:
4GGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GGV entry

There is 1 chain in PDB entry 4GGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 4GGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed alpha
Helix 2
2
A
14 19Right-handed 310
Helix 3
3
A
39 49Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
73 77Right-handed 310
Helix 6
6
A
80 93Right-handed alpha
Helix 7
7
A
94 100Right-handed alpha
Helix 8
8
A
101 115Right-handed alpha
Helix 9
9
A
124 128Right-handed alpha
Helix 10
10
A
130 141Right-handed alpha
Helix 11
11
A
144 146Right-handed 310
Helix 12
12
A
147 154Right-handed alpha
Helix 13
13
A
154 163Right-handed alpha
Helix 14
14
A
171 184Right-handed alpha
Helix 15
15
A
185 202Right-handed alpha
Helix 16
16
A
206 214Right-handed alpha
Helix 17
17
A
222 234Right-handed alpha
Helix 18
18
A
237 254Right-handed alpha
Helix 19
19
A
255 265Right-handed alpha
Helix 20
20
A
268 280Right-handed alpha
Helix 21
21
A
311 315Right-handed alpha
Helix 22
22
A
348 367Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4GGV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
306 310parallel
Strand 4
A
285 290anti-parallel
Strand 5
A
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
393 395anti-parallel
Strand 3
A
371 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
389 391anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il