Analysis of interatomic Contacts of Structural Units in PDB entry:
4GHB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GHB entry

There are 2 chains in PDB entry 4GHB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 55GLU 312
B
 GLU 53GLU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4GHB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
231 235Right-handed 310
Helix 2
2
A
237 240Right-handed 310
Helix 3
3
A
241 247Right-handed alpha
Helix 4
4
B
231 235Right-handed 310
Helix 5
5
B
237 240Right-handed 310
Helix 6
6
B
241 247Right-handed alpha
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There are 3 sheets in PDB entry 4GHB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 71first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
92 103anti-parallel
Strand 4
A
106 119anti-parallel
Strand 5
A
122 126anti-parallel
Strand 6
A
132 137anti-parallel
Strand 7
A
143 149anti-parallel
Strand 8
A
155 164anti-parallel
Strand 9
A
170 178anti-parallel
Strand 10
A
184 191anti-parallel
Strand 11
A
197 204anti-parallel
Strand 12
A
207 214anti-parallel
Strand 13
A
260 263anti-parallel
Strand 14
A
273 279anti-parallel
Strand 15
A
285 292anti-parallel
Strand 16
A
303 312anti-parallel
Strand 17
A
64 71anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
299 300anti-parallel
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There are 17 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 71first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
92 103anti-parallel
Strand 4
B
106 119anti-parallel
Strand 5
B
122 126anti-parallel
Strand 6
B
132 137anti-parallel
Strand 7
B
143 149anti-parallel
Strand 8
B
155 164anti-parallel
Strand 9
B
170 178anti-parallel
Strand 10
B
184 191anti-parallel
Strand 11
B
197 204anti-parallel
Strand 12
B
207 214anti-parallel
Strand 13
B
260 263anti-parallel
Strand 14
B
270 279anti-parallel
Strand 15
B
285 295anti-parallel
Strand 16
B
300 312anti-parallel
Strand 17
B
64 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il