Analysis of interatomic Contacts of Structural Units in PDB entry:
4GI7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GI7 entry

There are 8 chains in PDB entry 4GI7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1008	LYS 1316
C	LEU 1008	LYS 1316
B	LEU 1008	LYS 1316
D	MET 1009	LYS 1316
E	LEU 1008	LYS 1316
F	LEU 1008	LYS 1316
G	MET 1009	LYS 1316
H	LEU 1008	LYS 1316

There are151 helices in PDB entry 4GI7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1017	1022	Right-handed alpha
Helix 2	2	A	1022	1027	Right-handed alpha
Helix 3	3	A	1032	1043	Right-handed alpha
Helix 4	4	A	1047	1054	Right-handed alpha
Helix 5	5	A	1054	1081	Right-handed alpha
Helix 6	6	A	1100	1113	Right-handed alpha
Helix 7	7	A	1115	1119	Right-handed 310
Helix 8	8	A	1127	1130	Right-handed 310
Helix 9	9	A	1132	1140	Right-handed alpha
Helix 10	10	A	1141	1145	Right-handed 310
Helix 11	11	A	1147	1151	Right-handed 310
Helix 12	12	A	1152	1165	Right-handed alpha
Helix 13	13	A	1206	1210	Right-handed 310
Helix 14	14	A	1218	1223	Right-handed 310
Helix 15	15	A	1232	1252	Right-handed alpha
Helix 16	16	A	1259	1264	Right-handed alpha
Helix 17	17	A	1266	1281	Right-handed alpha
Helix 18	18	A	1281	1290	Right-handed alpha
Helix 19	19	A	1291	1297	Right-handed 310
Helix 20	20	A	1305	1307	Right-handed 310
Helix 21	21	C	1016	1025	Right-handed alpha
Helix 22	22	C	1032	1043	Right-handed alpha
Helix 23	23	C	1047	1054	Right-handed alpha
Helix 24	24	C	1054	1081	Right-handed alpha
Helix 25	25	C	1100	1113	Right-handed alpha
Helix 26	26	C	1114	1119	Right-handed 310
Helix 27	27	C	1127	1130	Right-handed 310
Helix 28	28	C	1132	1139	Right-handed alpha
Helix 29	29	C	1141	1145	Right-handed 310
Helix 30	30	C	1147	1151	Right-handed 310
Helix 31	31	C	1152	1164	Right-handed alpha
Helix 32	32	C	1206	1210	Right-handed 310
Helix 33	33	C	1218	1223	Right-handed 310
Helix 34	34	C	1232	1252	Right-handed alpha
Helix 35	35	C	1259	1264	Right-handed alpha
Helix 36	36	C	1266	1281	Right-handed alpha
Helix 37	37	C	1281	1290	Right-handed alpha
Helix 38	38	C	1291	1297	Right-handed 310
Helix 39	39	C	1305	1307	Right-handed 310
Helix 40	40	B	1017	1022	Right-handed alpha
Helix 41	41	B	1023	1025	Right-handed 310
Helix 42	42	B	1032	1043	Right-handed alpha
Helix 43	43	B	1047	1054	Right-handed alpha
Helix 44	44	B	1054	1081	Right-handed alpha
Helix 45	45	B	1100	1113	Right-handed alpha
Helix 46	46	B	1114	1119	Right-handed 310
Helix 47	47	B	1127	1130	Right-handed 310
Helix 48	48	B	1132	1140	Right-handed alpha
Helix 49	49	B	1141	1145	Right-handed 310
Helix 50	50	B	1147	1151	Right-handed 310
Helix 51	51	B	1152	1164	Right-handed alpha
Helix 52	52	B	1206	1210	Right-handed 310
Helix 53	53	B	1218	1223	Right-handed 310
Helix 54	54	B	1232	1251	Right-handed alpha
Helix 55	55	B	1259	1264	Right-handed alpha
Helix 56	56	B	1266	1281	Right-handed alpha
Helix 57	57	B	1281	1290	Right-handed alpha
Helix 58	58	B	1291	1297	Right-handed 310
Helix 59	59	B	1305	1307	Right-handed 310
Helix 60	60	D	1016	1025	Right-handed alpha
Helix 61	61	D	1032	1043	Right-handed alpha
Helix 62	62	D	1047	1054	Right-handed alpha
Helix 63	63	D	1054	1081	Right-handed alpha
Helix 64	64	D	1100	1113	Right-handed alpha
Helix 65	65	D	1114	1119	Right-handed 310
Helix 66	66	D	1127	1130	Right-handed 310
Helix 67	67	D	1132	1140	Right-handed alpha
Helix 68	68	D	1141	1145	Right-handed 310
Helix 69	69	D	1147	1151	Right-handed 310
Helix 70	70	D	1152	1164	Right-handed alpha
Helix 71	71	D	1206	1210	Right-handed 310
Helix 72	72	D	1218	1223	Right-handed 310
Helix 73	73	D	1232	1252	Right-handed alpha
Helix 74	74	D	1257	1265	Right-handed 310
Helix 75	75	D	1266	1281	Right-handed alpha
Helix 76	76	D	1281	1290	Right-handed alpha
Helix 77	77	D	1291	1297	Right-handed 310
Helix 78	78	D	1305	1307	Right-handed 310
Helix 79	79	E	1017	1022	Right-handed alpha
Helix 80	80	E	1032	1043	Right-handed alpha
Helix 81	81	E	1047	1054	Right-handed alpha
Helix 82	82	E	1054	1081	Right-handed alpha
Helix 83	83	E	1100	1113	Right-handed alpha
Helix 84	84	E	1127	1130	Right-handed 310
Helix 85	85	E	1132	1139	Right-handed alpha
Helix 86	86	E	1141	1145	Right-handed 310
Helix 87	87	E	1147	1151	Right-handed 310
Helix 88	88	E	1152	1164	Right-handed alpha
Helix 89	89	E	1206	1210	Right-handed 310
Helix 90	90	E	1218	1223	Right-handed 310
Helix 91	91	E	1232	1250	Right-handed alpha
Helix 92	92	E	1251	1254	Right-handed 310
Helix 93	93	E	1259	1265	Right-handed 310
Helix 94	94	E	1266	1281	Right-handed alpha
Helix 95	95	E	1281	1290	Right-handed alpha
Helix 96	96	E	1291	1297	Right-handed 310
Helix 97	97	E	1305	1307	Right-handed 310
Helix 98	98	F	1016	1025	Right-handed alpha
Helix 99	99	F	1032	1043	Right-handed alpha
Helix 100	100	F	1047	1054	Right-handed alpha
Helix 101	101	F	1054	1081	Right-handed alpha
Helix 102	102	F	1100	1113	Right-handed alpha
Helix 103	103	F	1114	1119	Right-handed 310
Helix 104	104	F	1127	1130	Right-handed 310
Helix 105	105	F	1132	1139	Right-handed alpha
Helix 106	106	F	1147	1151	Right-handed 310
Helix 107	107	F	1152	1164	Right-handed alpha
Helix 108	108	F	1206	1210	Right-handed 310
Helix 109	109	F	1218	1223	Right-handed 310
Helix 110	110	F	1232	1252	Right-handed alpha
Helix 111	111	F	1261	1265	Right-handed 310
Helix 112	112	F	1266	1281	Right-handed alpha
Helix 113	113	F	1281	1290	Right-handed alpha
Helix 114	114	F	1291	1297	Right-handed 310
Helix 115	115	G	1016	1025	Right-handed alpha
Helix 116	116	G	1032	1043	Right-handed alpha
Helix 117	117	G	1047	1054	Right-handed alpha
Helix 118	118	G	1054	1081	Right-handed alpha
Helix 119	119	G	1100	1113	Right-handed alpha
Helix 120	120	G	1114	1119	Right-handed 310
Helix 121	121	G	1127	1130	Right-handed 310
Helix 122	122	G	1132	1139	Right-handed alpha
Helix 123	123	G	1141	1145	Right-handed 310
Helix 124	124	G	1147	1151	Right-handed 310
Helix 125	125	G	1152	1164	Right-handed alpha
Helix 126	126	G	1206	1210	Right-handed 310
Helix 127	127	G	1218	1223	Right-handed 310
Helix 128	128	G	1232	1252	Right-handed alpha
Helix 129	129	G	1259	1265	Right-handed 310
Helix 130	130	G	1266	1281	Right-handed alpha
Helix 131	131	G	1281	1290	Right-handed alpha
Helix 132	132	G	1291	1297	Right-handed 310
Helix 133	133	G	1305	1307	Right-handed 310
Helix 134	134	H	1017	1022	Right-handed alpha
Helix 135	135	H	1032	1043	Right-handed alpha
Helix 136	136	H	1047	1054	Right-handed alpha
Helix 137	137	H	1054	1081	Right-handed alpha
Helix 138	138	H	1100	1113	Right-handed alpha
Helix 139	139	H	1127	1130	Right-handed 310
Helix 140	140	H	1132	1140	Right-handed alpha
Helix 141	141	H	1147	1151	Right-handed 310
Helix 142	142	H	1152	1164	Right-handed alpha
Helix 143	143	H	1206	1210	Right-handed 310
Helix 144	144	H	1218	1223	Right-handed 310
Helix 145	145	H	1232	1254	Right-handed alpha
Helix 146	146	H	1255	1258	Right-handed 310
Helix 147	147	H	1259	1265	Right-handed 310
Helix 148	148	H	1266	1281	Right-handed alpha
Helix 149	149	H	1281	1289	Right-handed alpha
Helix 150	150	H	1290	1297	Right-handed 310
Helix 151	151	H	1305	1307	Right-handed 310

There are 23 sheets in PDB entry 4GI7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1012	1016	first strand
Strand 2	A	1309	1315	anti-parallel
Strand 3	A	1299	1303	anti-parallel
Strand 4	A	1225	1230	parallel
Strand 5	A	1089	1095	parallel
Strand 6	A	1195	1199	parallel
Strand 7	A	1121	1125	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1170	1172	first strand
Strand 2	A	1188	1190	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1176	first strand
Strand 2	A	1181	1182	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1012	1014	first strand
Strand 2	C	1309	1315	anti-parallel
Strand 3	C	1299	1303	anti-parallel
Strand 4	C	1225	1230	parallel
Strand 5	C	1089	1095	parallel
Strand 6	C	1195	1199	parallel
Strand 7	C	1121	1125	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1170	1172	first strand
Strand 2	C	1188	1190	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1175	1176	first strand
Strand 2	C	1181	1182	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1012	1016	first strand
Strand 2	B	1309	1315	anti-parallel
Strand 3	B	1299	1303	anti-parallel
Strand 4	B	1225	1230	parallel
Strand 5	B	1089	1095	parallel
Strand 6	B	1195	1199	parallel
Strand 7	B	1121	1125	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1170	1172	first strand
Strand 2	B	1188	1190	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1175	1176	first strand
Strand 2	B	1181	1182	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1012	1014	first strand
Strand 2	D	1309	1315	anti-parallel
Strand 3	D	1299	1303	anti-parallel
Strand 4	D	1225	1230	parallel
Strand 5	D	1089	1095	parallel
Strand 6	D	1195	1199	parallel
Strand 7	D	1121	1125	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1170	1176	first strand
Strand 2	D	1181	1190	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1012	1016	first strand
Strand 2	E	1309	1315	anti-parallel
Strand 3	E	1299	1303	anti-parallel
Strand 4	E	1225	1230	parallel
Strand 5	E	1089	1095	parallel
Strand 6	E	1195	1199	parallel
Strand 7	E	1121	1125	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1170	1172	first strand
Strand 2	E	1188	1190	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1175	1176	first strand
Strand 2	E	1181	1182	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1012	1014	first strand
Strand 2	F	1309	1315	anti-parallel
Strand 3	F	1299	1303	anti-parallel
Strand 4	F	1225	1230	parallel
Strand 5	F	1089	1095	parallel
Strand 6	F	1195	1199	parallel
Strand 7	F	1121	1125	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1170	1172	first strand
Strand 2	F	1188	1190	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1175	1176	first strand
Strand 2	F	1181	1182	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1012	1014	first strand
Strand 2	G	1309	1315	anti-parallel
Strand 3	G	1299	1303	anti-parallel
Strand 4	G	1225	1230	parallel
Strand 5	G	1089	1095	parallel
Strand 6	G	1195	1199	parallel
Strand 7	G	1121	1125	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1170	1172	first strand
Strand 2	G	1188	1190	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1175	1176	first strand
Strand 2	G	1181	1182	anti-parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1012	1016	first strand
Strand 2	H	1309	1315	anti-parallel
Strand 3	H	1299	1303	anti-parallel
Strand 4	H	1225	1230	parallel
Strand 5	H	1089	1095	parallel
Strand 6	H	1195	1199	parallel
Strand 7	H	1121	1125	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1169	1172	first strand
Strand 2	H	1188	1191	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1175	1176	first strand
Strand 2	H	1181	1182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GI7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GI7