Analysis of interatomic Contacts of Structural Units in PDB entry:
4GIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GIC entry

There are 2 chains in PDB entry 4GIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 400
B
 THR 2SER 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4GIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
32 49Right-handed alpha
Helix 3
3
A
49 62Right-handed alpha
Helix 4
4
A
67 70Right-handed 310
Helix 5
5
A
74 84Right-handed alpha
Helix 6
6
A
86 108Right-handed alpha
Helix 7
7
A
143 158Right-handed alpha
Helix 8
8
A
168 172Right-handed 310
Helix 9
9
A
174 185Right-handed alpha
Helix 10
10
A
193 204Right-handed alpha
Helix 11
11
A
219 230Right-handed alpha
Helix 12
12
A
253 266Right-handed alpha
Helix 13
13
A
279 294Right-handed alpha
Helix 14
14
A
295 297Right-handed 310
Helix 15
15
A
299 311Right-handed alpha
Helix 16
16
A
318 330Right-handed alpha
Helix 17
17
A
340 345Right-handed alpha
Helix 18
18
A
346 348Right-handed 310
Helix 19
19
A
379 383Right-handed 310
Helix 20
20
A
388 391Right-handed 310
Helix 21
21
B
15 25Right-handed alpha
Helix 22
22
B
32 62Right-handed alpha
Helix 23
23
B
67 72Right-handed 310
Helix 24
24
B
74 84Right-handed alpha
Helix 25
25
B
86 108Right-handed alpha
Helix 26
26
B
143 158Right-handed alpha
Helix 27
27
B
168 172Right-handed 310
Helix 28
28
B
174 185Right-handed alpha
Helix 29
29
B
193 204Right-handed alpha
Helix 30
30
B
219 230Right-handed alpha
Helix 31
31
B
253 266Right-handed alpha
Helix 32
32
B
279 294Right-handed alpha
Helix 33
33
B
295 297Right-handed 310
Helix 34
34
B
299 311Right-handed alpha
Helix 35
35
B
318 330Right-handed alpha
Helix 36
36
B
340 345Right-handed alpha
Helix 37
37
B
346 348Right-handed 310
Helix 38
38
B
379 383Right-handed 310
Helix 39
39
B
388 391Right-handed 310
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There are 4 sheets in PDB entry 4GIC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
312 315parallel
Strand 3
A
272 277parallel
Strand 4
A
243 248parallel
Strand 5
A
333 337parallel
Strand 6
A
353 356parallel
Strand 7
B
393 400parallel
Strand 8
B
121 128anti-parallel
Strand 9
B
112 115anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
188 190anti-parallel
Strand 3
A
161 165parallel
Strand 4
A
131 135parallel
Strand 5
A
213 215parallel
Strand 6
A
234 235parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
121 128anti-parallel
Strand 3
A
393 399anti-parallel
Strand 4
B
353 356parallel
Strand 5
B
333 337parallel
Strand 6
B
243 248parallel
Strand 7
B
272 277parallel
Strand 8
B
312 315parallel
Strand 9
B
7 10parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
161 165parallel
Strand 3
B
131 135parallel
Strand 4
B
213 215parallel
Strand 5
B
234 235parallel
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