Analysis of interatomic Contacts of Structural Units in PDB entry:
4GIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GIJ entry

There are 3 chains in PDB entry 4GIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6ALA 311
B
 LYS 5ALA 311
C
 ILE 6ALA 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4GIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
32 39Right-handed alpha
Helix 3
3
A
42 58Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
98 105Right-handed alpha
Helix 7
7
A
112 123Right-handed alpha
Helix 8
8
A
139 144Right-handed alpha
Helix 9
9
A
147 156Right-handed alpha
Helix 10
10
A
170 181Right-handed alpha
Helix 11
11
A
211 225Right-handed alpha
Helix 12
12
A
238 242Right-handed 310
Helix 13
13
A
244 263Right-handed alpha
Helix 14
14
A
268 282Right-handed alpha
Helix 15
16
B
14 23Right-handed alpha
Helix 16
17
B
42 58Right-handed alpha
Helix 17
18
B
77 88Right-handed alpha
Helix 18
19
B
89 91Right-handed 310
Helix 19
20
B
98 106Right-handed alpha
Helix 20
21
B
112 124Right-handed alpha
Helix 21
22
B
139 144Right-handed alpha
Helix 22
23
B
147 156Right-handed alpha
Helix 23
24
B
170 181Right-handed alpha
Helix 24
25
B
211 225Right-handed alpha
Helix 25
26
B
238 242Right-handed 310
Helix 26
27
B
244 263Right-handed alpha
Helix 27
28
B
265 267Right-handed 310
Helix 28
29
B
268 282Right-handed alpha
Helix 29
30
B
283 311Right-handed alpha
Helix 30
31
C
14 23Right-handed alpha
Helix 31
32
C
32 37Right-handed alpha
Helix 32
33
C
43 58Right-handed alpha
Helix 33
34
C
77 88Right-handed alpha
Helix 34
35
C
89 91Right-handed 310
Helix 35
36
C
98 105Right-handed alpha
Helix 36
37
C
112 124Right-handed alpha
Helix 37
38
C
139 144Right-handed alpha
Helix 38
39
C
147 156Right-handed alpha
Helix 39
40
C
170 181Right-handed alpha
Helix 40
41
C
211 225Right-handed alpha
Helix 41
42
C
238 242Right-handed 310
Helix 42
43
C
244 260Right-handed alpha
Helix 43
44
C
268 282Right-handed alpha
Helix 44
45
C
284 311Right-handed alpha
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There are 6 sheets in PDB entry 4GIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
71 74parallel
Strand 3
A
61 68anti-parallel
Strand 4
A
27 30parallel
Strand 5
A
127 129parallel
Strand 6
A
159 162parallel
Strand 7
A
231 234parallel
Strand 8
A
185 188parallel
Strand 9
A
207 209parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
109 111parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
71 74parallel
Strand 3
B
61 68anti-parallel
Strand 4
B
27 30parallel
Strand 5
B
127 129parallel
Strand 6
B
159 162parallel
Strand 7
B
231 234parallel
Strand 8
B
185 188parallel
Strand 9
B
207 209parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
109 111parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
71 74parallel
Strand 3
C
61 68anti-parallel
Strand 4
C
109 111anti-parallel
Strand 5
C
92 94parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
71 74parallel
Strand 3
C
61 68anti-parallel
Strand 4
C
27 30parallel
Strand 5
C
127 129parallel
Strand 6
C
159 162parallel
Strand 7
C
231 234parallel
Strand 8
C
185 188parallel
Strand 9
C
207 209parallel
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