Analysis of interatomic Contacts of Structural Units in PDB entry:
4GIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GIM entry

There are 3 chains in PDB entry 4GIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6ALA 311
B
 LYS 5LEU 310
C
 ILE 6LEU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 4GIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
32 37Right-handed alpha
Helix 3
3
A
42 58Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
98 105Right-handed alpha
Helix 7
7
A
112 123Right-handed alpha
Helix 8
8
A
139 144Right-handed alpha
Helix 9
9
A
147 156Right-handed alpha
Helix 10
10
A
170 181Right-handed alpha
Helix 11
11
A
211 225Right-handed alpha
Helix 12
12
A
238 242Right-handed 310
Helix 13
13
A
244 263Right-handed alpha
Helix 14
14
A
265 267Right-handed 310
Helix 15
15
A
268 281Right-handed alpha
Helix 16
16
A
283 311Right-handed alpha
Helix 17
17
B
14 23Right-handed alpha
Helix 18
18
B
32 37Right-handed alpha
Helix 19
19
B
42 58Right-handed alpha
Helix 20
20
B
77 88Right-handed alpha
Helix 21
21
B
89 91Right-handed 310
Helix 22
22
B
98 105Right-handed alpha
Helix 23
23
B
112 124Right-handed alpha
Helix 24
24
B
139 144Right-handed alpha
Helix 25
25
B
147 156Right-handed alpha
Helix 26
26
B
170 181Right-handed alpha
Helix 27
27
B
211 225Right-handed alpha
Helix 28
28
B
238 242Right-handed 310
Helix 29
29
B
244 262Right-handed alpha
Helix 30
30
B
265 267Right-handed 310
Helix 31
31
B
268 281Right-handed alpha
Helix 32
32
B
283 310Right-handed alpha
Helix 33
33
C
14 23Right-handed alpha
Helix 34
34
C
32 37Right-handed alpha
Helix 35
35
C
42 58Right-handed alpha
Helix 36
36
C
77 88Right-handed alpha
Helix 37
37
C
89 91Right-handed 310
Helix 38
38
C
98 105Right-handed alpha
Helix 39
39
C
112 124Right-handed alpha
Helix 40
40
C
139 144Right-handed alpha
Helix 41
41
C
147 156Right-handed alpha
Helix 42
42
C
170 181Right-handed alpha
Helix 43
43
C
211 225Right-handed alpha
Helix 44
44
C
238 242Right-handed 310
Helix 45
45
C
244 263Right-handed alpha
Helix 46
46
C
265 267Right-handed 310
Helix 47
47
C
268 281Right-handed alpha
Helix 48
48
C
283 310Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4GIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
71 74parallel
Strand 3
A
61 68anti-parallel
Strand 4
A
27 30parallel
Strand 5
A
127 129parallel
Strand 6
A
159 162parallel
Strand 7
A
231 234parallel
Strand 8
A
185 188parallel
Strand 9
A
207 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
109 111parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
71 74parallel
Strand 3
B
61 68anti-parallel
Strand 4
B
27 30parallel
Strand 5
B
127 129parallel
Strand 6
B
159 162parallel
Strand 7
B
231 234parallel
Strand 8
B
185 188parallel
Strand 9
B
207 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
109 111parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
71 74parallel
Strand 3
C
61 68anti-parallel
Strand 4
C
27 30parallel
Strand 5
C
127 129parallel
Strand 6
C
159 162parallel
Strand 7
C
231 234parallel
Strand 8
C
185 188parallel
Strand 9
C
207 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
109 111parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il