Analysis of interatomic Contacts of Structural Units in PDB entry:
4GIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GIP entry

There are 6 chains in PDB entry 4GIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20ARG 100
D
 PHE 103ILE 477
B
 LEU 20ARG 100
E
 PHE 103ILE 477
C
 LEU 20ARG 100
F
 PHE 103PRO 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 4GIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 27Right-handed alpha
Helix 2
2
A
66 94Right-handed alpha
Helix 3
3
D
109 113Right-handed 310
Helix 4
4
D
118 130Right-handed alpha
Helix 5
5
D
130 139Right-handed alpha
Helix 6
6
D
140 147Right-handed alpha
Helix 7
7
D
168 176Right-handed alpha
Helix 8
8
D
184 204Right-handed alpha
Helix 9
9
D
213 217Right-handed 310
Helix 10
10
D
220 229Right-handed alpha
Helix 11
11
D
231 240Right-handed alpha
Helix 12
12
D
245 251Right-handed alpha
Helix 13
13
D
342 350Right-handed alpha
Helix 14
14
D
351 356Right-handed 310
Helix 15
15
D
364 367Right-handed 310
Helix 16
16
D
437 441Right-handed 310
Helix 17
17
D
445 476Right-handed alpha
Helix 18
18
B
21 27Right-handed alpha
Helix 19
19
B
66 80Right-handed alpha
Helix 20
20
B
80 94Right-handed alpha
Helix 21
21
E
109 113Right-handed 310
Helix 22
22
E
118 130Right-handed alpha
Helix 23
23
E
130 139Right-handed alpha
Helix 24
24
E
140 147Right-handed alpha
Helix 25
25
E
168 176Right-handed alpha
Helix 26
26
E
185 204Right-handed alpha
Helix 27
27
E
213 217Right-handed 310
Helix 28
28
E
220 229Right-handed alpha
Helix 29
29
E
230 239Right-handed alpha
Helix 30
30
E
245 251Right-handed alpha
Helix 31
31
E
342 350Right-handed alpha
Helix 32
32
E
351 356Right-handed 310
Helix 33
33
E
364 367Right-handed 310
Helix 34
34
E
437 441Right-handed 310
Helix 35
35
E
445 473Right-handed alpha
Helix 36
36
C
21 27Right-handed alpha
Helix 37
37
C
66 94Right-handed alpha
Helix 38
38
F
109 113Right-handed 310
Helix 39
39
F
118 130Right-handed alpha
Helix 40
40
F
130 139Right-handed alpha
Helix 41
41
F
140 147Right-handed alpha
Helix 42
42
F
168 174Right-handed alpha
Helix 43
43
F
184 204Right-handed alpha
Helix 44
44
F
213 217Right-handed 310
Helix 45
45
F
220 229Right-handed alpha
Helix 46
46
F
230 240Right-handed alpha
Helix 47
47
F
245 252Right-handed alpha
Helix 48
48
F
342 350Right-handed alpha
Helix 49
49
F
351 356Right-handed 310
Helix 50
50
F
364 367Right-handed 310
Helix 51
51
F
437 441Right-handed 310
Helix 52
52
F
445 469Right-handed alpha
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There are 18 sheets in PDB entry 4GIP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 156first strand
Strand 2
D
159 165anti-parallel
Strand 3
A
30 52parallel
Strand 4
D
268 291anti-parallel
Strand 5
D
308 312anti-parallel
Strand 6
D
315 318anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
256 263first strand
Strand 2
D
268 291anti-parallel
Strand 3
A
30 52anti-parallel
Strand 4
D
330 332parallel
Strand 5
D
325 326anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
D
107 108anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 117first strand
Strand 2
F
369 372anti-parallel
Strand 3
F
375 378anti-parallel
Strand 4
F
403 405anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
294 296first strand
Strand 2
D
299 303anti-parallel
Strand 3
D
358 360anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
403 405first strand
Strand 2
D
375 378anti-parallel
Strand 3
D
369 372anti-parallel
Strand 4
E
115 117anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
392 394first strand
Strand 2
D
385 389anti-parallel
Strand 3
D
412 415anti-parallel
Strand 4
D
418 421anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
151 156first strand
Strand 2
E
159 165anti-parallel
Strand 3
B
30 52parallel
Strand 4
E
268 291anti-parallel
Strand 5
E
308 312anti-parallel
Strand 6
E
315 318anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
256 263first strand
Strand 2
E
268 291anti-parallel
Strand 3
B
30 52anti-parallel
Strand 4
E
330 332parallel
Strand 5
E
325 326anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
E
107 108anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
294 296first strand
Strand 2
E
299 303anti-parallel
Strand 3
E
358 360anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
403 405first strand
Strand 2
E
375 378anti-parallel
Strand 3
E
369 372anti-parallel
Strand 4
F
115 117anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
392 393first strand
Strand 2
E
386 389anti-parallel
Strand 3
E
412 415anti-parallel
Strand 4
E
418 421anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
151 155first strand
Strand 2
F
160 165anti-parallel
Strand 3
C
30 52parallel
Strand 4
F
268 291anti-parallel
Strand 5
F
308 312anti-parallel
Strand 6
F
315 318anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
256 263first strand
Strand 2
F
268 291anti-parallel
Strand 3
C
30 52anti-parallel
Strand 4
F
330 332parallel
Strand 5
F
325 326anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
F
107 108anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
294 296first strand
Strand 2
F
299 303anti-parallel
Strand 3
F
358 360anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
392 394first strand
Strand 2
F
385 389anti-parallel
Strand 3
F
412 415anti-parallel
Strand 4
F
418 421anti-parallel
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