Analysis of interatomic Contacts of Structural Units in PDB entry:
4GJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GJ4 entry

There are 4 chains in PDB entry 4GJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 279LEU 391
B
 ILE 279GLY 390
C
 ILE 279LEU 391
D
 ILE 279THR 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4GJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
280 286Right-handed alpha
Helix 2
2
A
304 312Right-handed alpha
Helix 3
3
A
314 319Right-handed alpha
Helix 4
4
A
321 325Right-handed alpha
Helix 5
5
A
337 344Right-handed alpha
Helix 6
6
A
388 391Right-handed 310
Helix 7
7
B
280 286Right-handed alpha
Helix 8
8
B
304 312Right-handed alpha
Helix 9
9
B
314 319Right-handed alpha
Helix 10
10
B
321 325Right-handed alpha
Helix 11
11
B
337 343Right-handed alpha
Helix 12
12
C
280 286Right-handed alpha
Helix 13
13
C
304 312Right-handed alpha
Helix 14
14
C
314 319Right-handed alpha
Helix 15
15
C
321 325Right-handed alpha
Helix 16
16
C
337 344Right-handed alpha
Helix 17
17
D
280 286Right-handed alpha
Helix 18
18
D
304 312Right-handed alpha
Helix 19
19
D
314 319Right-handed alpha
Helix 20
20
D
321 325Right-handed alpha
Helix 21
21
D
337 343Right-handed alpha
Helix 22
22
D
375 378Right-handed 310
Helix 23
23
D
388 392Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4GJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
379 387anti-parallel
Strand 4
A
366 374anti-parallel
Strand 5
A
348 353anti-parallel
Strand 6
A
326 330anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
291 294anti-parallel
Strand 3
B
379 387anti-parallel
Strand 4
B
366 374anti-parallel
Strand 5
B
349 353anti-parallel
Strand 6
B
326 330anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 303first strand
Strand 2
C
291 294anti-parallel
Strand 3
C
379 387anti-parallel
Strand 4
C
366 374anti-parallel
Strand 5
C
349 353anti-parallel
Strand 6
C
326 330anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 303first strand
Strand 2
D
291 294anti-parallel
Strand 3
D
379 387anti-parallel
Strand 4
D
366 374anti-parallel
Strand 5
D
348 353anti-parallel
Strand 6
D
326 330anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il