Analysis of interatomic Contacts of Structural Units in PDB entry:
4GJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GJH entry

There are 3 chains in PDB entry 4GJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 331ASP 505
B
 ILE 330ASP 505
C
 ASN 329ASP 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4GJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
331 348Right-handed alpha
Helix 2
2
A
360 370Right-handed alpha
Helix 3
3
A
399 403Right-handed 310
Helix 4
4
A
418 422Right-handed 310
Helix 5
5
A
454 458Right-handed 310
Helix 6
6
A
476 481Right-handed alpha
Helix 7
7
B
331 348Right-handed alpha
Helix 8
8
B
360 370Right-handed alpha
Helix 9
9
B
399 403Right-handed 310
Helix 10
10
B
418 422Right-handed 310
Helix 11
11
B
476 481Right-handed alpha
Helix 12
12
C
330 348Right-handed alpha
Helix 13
13
C
360 370Right-handed alpha
Helix 14
14
C
399 403Right-handed 310
Helix 15
15
C
418 422Right-handed 310
Helix 16
16
C
454 458Right-handed 310
Helix 17
17
C
476 481Right-handed alpha
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There are 9 sheets in PDB entry 4GJH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 358first strand
Strand 2
A
492 498anti-parallel
Strand 3
A
429 434anti-parallel
Strand 4
A
444 449anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
389 395anti-parallel
Strand 3
A
381 382anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
389 395anti-parallel
Strand 3
A
406 413anti-parallel
Strand 4
A
468 475anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 358first strand
Strand 2
B
492 498anti-parallel
Strand 3
B
429 434anti-parallel
Strand 4
B
444 449anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
389 395anti-parallel
Strand 3
B
381 382anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
389 395anti-parallel
Strand 3
B
406 414anti-parallel
Strand 4
B
468 475anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 358first strand
Strand 2
C
492 498anti-parallel
Strand 3
C
429 434anti-parallel
Strand 4
C
444 449anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 377first strand
Strand 2
C
389 395anti-parallel
Strand 3
C
381 382anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 377first strand
Strand 2
C
389 395anti-parallel
Strand 3
C
406 413anti-parallel
Strand 4
C
468 475anti-parallel
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