Analysis of interatomic Contacts of Structural Units in PDB entry:
4GJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GJT entry

There are 3 chains in PDB entry 4GJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 156CYS 606
B
 GLY 1VAL 114
C
 GLY 1LEU 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 4GJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
156 160Right-handed 310
Helix 2
2
A
161 166Right-handed alpha
Helix 3
3
A
205 212Right-handed alpha
Helix 4
4
A
373 385Right-handed alpha
Helix 5
5
A
399 404Right-handed alpha
Helix 6
6
B
60 64Right-handed 310
Helix 7
7
C
87 91Right-handed 310
Back to top of page

There are 15 sheets in PDB entry 4GJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
594 604anti-parallel
Strand 3
A
576 585anti-parallel
Strand 4
A
563 565anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
594 604anti-parallel
Strand 3
A
576 585anti-parallel
Strand 4
A
568 573anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 224first strand
Strand 2
A
227 236anti-parallel
Strand 3
A
250 261anti-parallel
Strand 4
A
269 279anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
362 371anti-parallel
Strand 4
A
355 359anti-parallel
Strand 5
A
287 291parallel
Strand 6
A
296 300anti-parallel
Strand 7
A
318 324anti-parallel
Strand 8
A
333 338anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
362 371anti-parallel
Strand 4
A
408 416anti-parallel
Strand 5
A
426 430anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 445first strand
Strand 2
A
451 456anti-parallel
Strand 3
A
466 471anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
495 497anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
523 530anti-parallel
Strand 3
A
515 517anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
523 530anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
548 551anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
22 23anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
105 113parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
31 38anti-parallel
Strand 5
B
47 51anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
81 84anti-parallel
Strand 3
B
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
81 83anti-parallel
Strand 3
C
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
30 38anti-parallel
Strand 4
C
92 101anti-parallel
Strand 5
C
104 112anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il