Analysis of interatomic Contacts of Structural Units in PDB entry:
4GJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GJX entry

There are 8 chains in PDB entry 4GJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 158	ALA 292
B	PHE 158	ALA 292
C	PHE 158	PRO 291
D	PHE 158	ALA 292
E	PHE 158	ALA 292
F	PHE 158	ALA 292
G	PHE 158	ALA 292
H	PHE 158	PRO 291

There are 24 helices in PDB entry 4GJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	183	194	Right-handed alpha
Helix 2	2	A	203	214	Right-handed alpha
Helix 3	3	A	227	229	Right-handed 310
Helix 4	4	B	183	194	Right-handed alpha
Helix 5	5	B	203	214	Right-handed alpha
Helix 6	6	B	227	229	Right-handed 310
Helix 7	7	C	183	194	Right-handed alpha
Helix 8	8	C	203	214	Right-handed alpha
Helix 9	9	C	227	229	Right-handed 310
Helix 10	10	D	183	194	Right-handed alpha
Helix 11	11	D	203	214	Right-handed alpha
Helix 12	12	D	227	229	Right-handed 310
Helix 13	13	E	183	194	Right-handed alpha
Helix 14	14	E	203	214	Right-handed alpha
Helix 15	15	E	227	229	Right-handed 310
Helix 16	16	F	183	194	Right-handed alpha
Helix 17	17	F	203	214	Right-handed alpha
Helix 18	18	F	227	229	Right-handed 310
Helix 19	19	G	183	194	Right-handed alpha
Helix 20	20	G	203	214	Right-handed alpha
Helix 21	21	G	227	229	Right-handed 310
Helix 22	22	H	183	194	Right-handed alpha
Helix 23	23	H	203	212	Right-handed alpha
Helix 24	24	H	227	229	Right-handed 310

There are 22 sheets in PDB entry 4GJX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	287	289	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	173	182	anti-parallel
Strand 3	A	277	285	anti-parallel
Strand 4	A	197	198	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	219	225	anti-parallel
Strand 3	A	259	262	anti-parallel
Strand 4	A	268	271	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	277	285	anti-parallel
Strand 4	B	219	225	parallel
Strand 5	B	232	234	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	277	285	anti-parallel
Strand 3	B	219	225	parallel
Strand 4	B	259	262	anti-parallel
Strand 5	B	268	271	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	287	289	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	170	first strand
Strand 2	C	173	182	anti-parallel
Strand 3	C	277	285	anti-parallel
Strand 4	C	219	225	parallel
Strand 5	C	232	234	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	277	285	anti-parallel
Strand 3	C	219	225	parallel
Strand 4	C	259	262	anti-parallel
Strand 5	C	268	271	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	287	289	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	173	182	anti-parallel
Strand 3	D	277	285	anti-parallel
Strand 4	D	219	225	parallel
Strand 5	D	232	234	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	198	first strand
Strand 2	D	277	285	anti-parallel
Strand 3	D	219	225	parallel
Strand 4	D	259	262	anti-parallel
Strand 5	D	268	271	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	287	289	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	170	first strand
Strand 2	E	173	182	anti-parallel
Strand 3	E	277	285	anti-parallel
Strand 4	E	197	198	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	234	first strand
Strand 2	E	219	225	anti-parallel
Strand 3	E	259	262	anti-parallel
Strand 4	E	268	271	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	162	first strand
Strand 2	F	287	288	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	170	first strand
Strand 2	F	173	182	anti-parallel
Strand 3	F	277	285	anti-parallel
Strand 4	F	219	225	parallel
Strand 5	F	232	234	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	198	first strand
Strand 2	F	277	285	anti-parallel
Strand 3	F	219	225	parallel
Strand 4	F	259	262	anti-parallel
Strand 5	F	268	271	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	170	first strand
Strand 2	G	173	182	anti-parallel
Strand 3	G	277	285	anti-parallel
Strand 4	G	219	225	parallel
Strand 5	G	232	234	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	197	198	first strand
Strand 2	G	277	285	anti-parallel
Strand 3	G	219	225	parallel
Strand 4	G	259	262	anti-parallel
Strand 5	G	268	271	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	162	first strand
Strand 2	H	287	288	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	170	first strand
Strand 2	H	173	182	anti-parallel
Strand 3	H	277	285	anti-parallel
Strand 4	H	219	225	parallel
Strand 5	H	232	234	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	198	first strand
Strand 2	H	277	285	anti-parallel
Strand 3	H	219	225	parallel
Strand 4	H	259	262	anti-parallel
Strand 5	H	268	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GJX