Analysis of interatomic Contacts of Structural Units in PDB entry:
4GL8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GL8 entry

There are 4 chains in PDB entry 4GL8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 30	ILE 529
B	LYS 30	ILE 529
C	UNK 0	UNK 3
D	UNK 0	UNK 3

There are 50 helices in PDB entry 4GL8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	51	59	Right-handed alpha
Helix 2	2	A	109	121	Right-handed alpha
Helix 3	3	A	122	126	Right-handed 310
Helix 4	4	A	129	137	Right-handed alpha
Helix 5	5	A	139	145	Right-handed alpha
Helix 6	6	A	149	153	Right-handed 310
Helix 7	7	A	173	178	Right-handed alpha
Helix 8	8	A	179	184	Right-handed 310
Helix 9	9	A	187	195	Right-handed alpha
Helix 10	10	A	196	198	Right-handed 310
Helix 11	11	A	231	235	Right-handed 310
Helix 12	12	A	247	257	Right-handed alpha
Helix 13	13	A	268	270	Right-handed 310
Helix 14	14	A	271	276	Right-handed alpha
Helix 15	15	A	303	313	Right-handed alpha
Helix 16	16	A	315	323	Right-handed alpha
Helix 17	17	A	351	363	Right-handed alpha
Helix 18	18	A	364	368	Right-handed 310
Helix 19	19	A	380	399	Right-handed alpha
Helix 20	20	A	408	419	Right-handed alpha
Helix 21	21	A	435	440	Right-handed alpha
Helix 22	22	A	441	450	Right-handed 310
Helix 23	23	A	456	468	Right-handed alpha
Helix 24	24	A	471	489	Right-handed alpha
Helix 25	25	A	522	526	Right-handed 310
Helix 26	26	B	51	59	Right-handed alpha
Helix 27	27	B	109	121	Right-handed alpha
Helix 28	28	B	122	126	Right-handed 310
Helix 29	29	B	129	135	Right-handed alpha
Helix 30	30	B	139	145	Right-handed alpha
Helix 31	31	B	149	153	Right-handed 310
Helix 32	32	B	173	178	Right-handed alpha
Helix 33	33	B	179	184	Right-handed 310
Helix 34	34	B	187	195	Right-handed alpha
Helix 35	35	B	196	198	Right-handed 310
Helix 36	36	B	231	235	Right-handed 310
Helix 37	37	B	247	257	Right-handed alpha
Helix 38	38	B	268	270	Right-handed 310
Helix 39	39	B	271	276	Right-handed alpha
Helix 40	40	B	303	313	Right-handed alpha
Helix 41	41	B	315	322	Right-handed alpha
Helix 42	42	B	351	362	Right-handed alpha
Helix 43	43	B	364	368	Right-handed 310
Helix 44	44	B	380	399	Right-handed alpha
Helix 45	45	B	408	419	Right-handed alpha
Helix 46	46	B	435	440	Right-handed alpha
Helix 47	47	B	441	450	Right-handed 310
Helix 48	48	B	456	468	Right-handed alpha
Helix 49	49	B	471	489	Right-handed alpha
Helix 50	50	B	522	526	Right-handed 310

There are 10 sheets in PDB entry 4GL8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	220	225	anti-parallel
Strand 3	A	239	243	anti-parallel
Strand 4	A	32	36	parallel
Strand 5	A	262	264	parallel
Strand 6	A	493	505	anti-parallel
Strand 7	A	329	330	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	220	225	anti-parallel
Strand 3	A	239	243	anti-parallel
Strand 4	A	32	36	parallel
Strand 5	A	262	264	parallel
Strand 6	A	493	505	anti-parallel
Strand 7	A	281	294	anti-parallel
Strand 8	A	423	429	anti-parallel
Strand 9	A	373	378	parallel
Strand 10	A	402	407	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	75	77	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	85	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	155	159	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	511	first strand
Strand 2	A	527	528	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	216	first strand
Strand 2	B	220	225	anti-parallel
Strand 3	B	239	243	anti-parallel
Strand 4	B	32	36	parallel
Strand 5	B	262	264	parallel
Strand 6	B	493	505	anti-parallel
Strand 7	B	329	330	anti-parallel

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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	216	first strand
Strand 2	B	220	225	anti-parallel
Strand 3	B	239	243	anti-parallel
Strand 4	B	32	36	parallel
Strand 5	B	262	264	parallel
Strand 6	B	493	505	anti-parallel
Strand 7	B	281	294	anti-parallel
Strand 8	B	423	429	anti-parallel
Strand 9	B	374	378	parallel
Strand 10	B	403	407	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	75	77	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	85	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	162	166	anti-parallel
Strand 4	B	155	159	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	511	first strand
Strand 2	B	527	528	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GL8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GL8