Analysis of interatomic Contacts of Structural Units in PDB entry:
4GL9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GL9 entry

There are 20 chains in PDB entry 4GL9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 843	GLU 1006
A	LYS 1009	ILE 1130
B	GLN 843	GLU 1006
B	LYS 1009	ILE 1130
I	VAL 755	GLU 756
I	SER 758	HIS 762
C	GLN 843	GLU 1006
C	LYS 1009	ILE 1130
K	VAL 755	GLU 756
K	SER 758	HIS 762
J	THR 754	GLU 756
J	SER 758	HIS 762
E	LEU 22	SER 161
L	VAL 755	GLU 756
L	SER 758	HIS 762
D	GLN 843	GLU 1006
D	LYS 1009	ILE 1130
F	LEU 22	SER 161
G	LEU 22	SER 161
H	LEU 22	SER 161

There are 52 helices in PDB entry 4GL9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	888	904	Right-handed alpha
Helix 2	2	A	936	944	Right-handed alpha
Helix 3	3	A	949	970	Right-handed alpha
Helix 4	4	A	978	980	Right-handed 310
Helix 5	5	A	1022	1028	Right-handed alpha
Helix 6	6	A	1033	1050	Right-handed alpha
Helix 7	7	A	1056	1066	Right-handed alpha
Helix 8	8	A	1072	1084	Right-handed alpha
Helix 9	9	A	1095	1106	Right-handed alpha
Helix 10	10	A	1115	1130	Right-handed alpha
Helix 11	11	B	888	904	Right-handed alpha
Helix 12	12	B	936	944	Right-handed alpha
Helix 13	13	B	949	970	Right-handed alpha
Helix 14	14	B	978	980	Right-handed 310
Helix 15	15	B	1022	1028	Right-handed alpha
Helix 16	16	B	1033	1050	Right-handed alpha
Helix 17	17	B	1056	1066	Right-handed alpha
Helix 18	18	B	1072	1084	Right-handed alpha
Helix 19	19	B	1095	1106	Right-handed alpha
Helix 20	20	B	1115	1130	Right-handed alpha
Helix 21	21	C	888	904	Right-handed alpha
Helix 22	22	C	936	944	Right-handed alpha
Helix 23	23	C	949	970	Right-handed alpha
Helix 24	24	C	978	980	Right-handed 310
Helix 25	25	C	1022	1028	Right-handed alpha
Helix 26	26	C	1033	1050	Right-handed alpha
Helix 27	27	C	1056	1066	Right-handed alpha
Helix 28	28	C	1072	1084	Right-handed alpha
Helix 29	29	C	1095	1106	Right-handed alpha
Helix 30	30	C	1115	1128	Right-handed alpha
Helix 31	31	E	27	45	Right-handed alpha
Helix 32	32	E	52	60	Right-handed alpha
Helix 33	33	E	119	128	Right-handed alpha
Helix 34	34	D	888	904	Right-handed alpha
Helix 35	35	D	936	944	Right-handed alpha
Helix 36	36	D	949	970	Right-handed alpha
Helix 37	37	D	978	980	Right-handed 310
Helix 38	38	D	1022	1028	Right-handed alpha
Helix 39	39	D	1033	1050	Right-handed alpha
Helix 40	40	D	1056	1066	Right-handed alpha
Helix 41	41	D	1072	1084	Right-handed alpha
Helix 42	42	D	1095	1106	Right-handed alpha
Helix 43	43	D	1115	1128	Right-handed alpha
Helix 44	44	F	27	45	Right-handed alpha
Helix 45	45	F	52	60	Right-handed alpha
Helix 46	46	F	119	128	Right-handed alpha
Helix 47	47	G	27	45	Right-handed alpha
Helix 48	48	G	52	60	Right-handed alpha
Helix 49	49	G	119	129	Right-handed alpha
Helix 50	50	H	27	45	Right-handed alpha
Helix 51	51	H	52	60	Right-handed alpha
Helix 52	52	H	119	129	Right-handed alpha

There are 28 sheets in PDB entry 4GL9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	858	first strand
Strand 2	A	861	868	anti-parallel
Strand 3	A	878	884	anti-parallel
Strand 4	A	926	930	anti-parallel
Strand 5	A	913	917	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	972	973	first strand
Strand 2	A	999	1000	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	986	first strand
Strand 2	A	989	992	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1008	1009	first strand
Strand 2	A	1030	1031	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	858	first strand
Strand 2	B	861	868	anti-parallel
Strand 3	B	877	884	anti-parallel
Strand 4	B	926	930	anti-parallel
Strand 5	B	913	917	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	972	973	first strand
Strand 2	B	999	1000	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	982	986	first strand
Strand 2	B	989	992	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1008	1009	first strand
Strand 2	B	1030	1031	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	760	761	first strand
Strand 2	G	143	144	anti-parallel
Strand 3	G	151	152	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	858	first strand
Strand 2	C	861	868	anti-parallel
Strand 3	C	877	884	anti-parallel
Strand 4	C	926	930	anti-parallel
Strand 5	C	913	917	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	972	973	first strand
Strand 2	C	999	1000	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	982	986	first strand
Strand 2	C	989	992	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1008	1009	first strand
Strand 2	C	1030	1031	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	760	761	first strand
Strand 2	E	143	144	anti-parallel
Strand 3	E	151	152	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	760	761	first strand
Strand 2	F	143	144	anti-parallel
Strand 3	F	151	152	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	67	72	parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	90	98	anti-parallel
Strand 5	E	101	104	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	67	72	parallel
Strand 3	E	157	158	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	760	761	first strand
Strand 2	H	143	144	anti-parallel
Strand 3	H	151	152	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	849	858	first strand
Strand 2	D	861	868	anti-parallel
Strand 3	D	878	884	anti-parallel
Strand 4	D	926	930	anti-parallel
Strand 5	D	913	917	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	972	973	first strand
Strand 2	D	999	1000	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	982	986	first strand
Strand 2	D	989	992	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1008	1009	first strand
Strand 2	D	1030	1031	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	67	72	parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	90	98	anti-parallel
Strand 5	F	101	104	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	67	72	parallel
Strand 3	F	157	158	parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	48	first strand
Strand 2	G	67	72	parallel
Strand 3	G	80	85	anti-parallel
Strand 4	G	90	98	anti-parallel
Strand 5	G	101	104	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	48	first strand
Strand 2	G	67	72	parallel
Strand 3	G	157	158	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	48	first strand
Strand 2	H	67	72	parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	90	97	anti-parallel
Strand 5	H	102	104	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	48	first strand
Strand 2	H	67	72	parallel
Strand 3	H	157	158	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GL9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GL9