Analysis of interatomic Contacts of Structural Units in PDB entry:
4GLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GLS entry

There are 16 chains in PDB entry 4GLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51GLY 52
A
 GLY 58GLY 58
A
 GLY 81GLY 81
A
 GLY 85GLY 85
B
 GLY 51GLY 52
B
 GLY 58GLY 58
B
 GLY 81GLY 81
B
 GLY 85GLY 85
C
 THR 1GLU 56
D
 GLY 8GLY 8
D
 GLY 13GLY 13
E
 GLU 6LYS 100
F
 GLU 6LYS 100
H
 GLY 8GLY 8
H
 GLY 13GLY 13
G
 THR 1GLU 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4GLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 18Right-handed alpha
Helix 2
2
A
28 32Right-handed alpha
Helix 3
3
B
9 18Right-handed alpha
Helix 4
4
B
28 32Right-handed alpha
Helix 5
5
C
21 37Right-handed alpha
Helix 6
6
D
21 37Right-handed alpha
Helix 7
7
E
9 18Right-handed alpha
Helix 8
8
E
28 32Right-handed alpha
Helix 9
9
F
9 18Right-handed alpha
Helix 10
10
F
28 32Right-handed alpha
Helix 11
11
H
21 35Right-handed alpha
Helix 12
12
H
47 49Right-handed 310
Helix 13
13
G
21 35Right-handed alpha
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There are 12 sheets in PDB entry 4GLS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 27first strand
Strand 2
A
44 51anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
59 77anti-parallel
Strand 3
A
81 99anti-parallel
Strand 4
G
39 40parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 27first strand
Strand 2
B
44 51anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
59 77anti-parallel
Strand 3
B
81 99anti-parallel
Strand 4
C
39 40parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 17first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
51 55parallel
Strand 4
C
42 46anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 17first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
51 55parallel
Strand 4
D
42 45anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
F
81 99parallel
Strand 3
F
59 77anti-parallel
Strand 4
F
39 41anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 27first strand
Strand 2
E
44 51anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
59 77anti-parallel
Strand 3
E
81 99anti-parallel
Strand 4
H
39 40parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
20 27first strand
Strand 2
F
44 51anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 17first strand
Strand 2
H
2 7anti-parallel
Strand 3
H
51 55parallel
Strand 4
H
42 46anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 17first strand
Strand 2
G
2 7anti-parallel
Strand 3
G
51 55parallel
Strand 4
G
42 45anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il