Analysis of interatomic Contacts of Structural Units in PDB entry:
4GM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GM2 entry

There are 7 chains in PDB entry 4GM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 61	LYS 243
B	PRO 61	LYS 243
C	PRO 61	LYS 243
D	PRO 61	LYS 243
E	PRO 61	LYS 243
F	PRO 61	LYS 243
G	PRO 61	LYS 243

There are 49 helices in PDB entry 4GM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	61	66	Right-handed alpha
Helix 2	2	A	77	95	Right-handed alpha
Helix 3	3	A	119	134	Right-handed alpha
Helix 4	4	A	148	156	Right-handed alpha
Helix 5	5	A	186	210	Right-handed alpha
Helix 6	6	A	212	220	Right-handed alpha
Helix 7	7	A	228	234	Right-handed alpha
Helix 8	8	B	62	66	Right-handed alpha
Helix 9	9	B	77	95	Right-handed alpha
Helix 10	10	B	119	132	Right-handed alpha
Helix 11	11	B	148	156	Right-handed alpha
Helix 12	12	B	194	210	Right-handed alpha
Helix 13	13	B	212	220	Right-handed alpha
Helix 14	14	B	228	234	Right-handed alpha
Helix 15	15	C	62	66	Right-handed alpha
Helix 16	16	C	77	95	Right-handed alpha
Helix 17	17	C	119	134	Right-handed alpha
Helix 18	18	C	148	156	Right-handed alpha
Helix 19	19	C	191	210	Right-handed alpha
Helix 20	20	C	212	220	Right-handed alpha
Helix 21	21	C	228	234	Right-handed alpha
Helix 22	22	D	62	66	Right-handed alpha
Helix 23	23	D	77	95	Right-handed alpha
Helix 24	24	D	119	134	Right-handed alpha
Helix 25	25	D	148	156	Right-handed alpha
Helix 26	26	D	195	210	Right-handed alpha
Helix 27	27	D	212	221	Right-handed alpha
Helix 28	28	D	228	234	Right-handed alpha
Helix 29	29	E	62	66	Right-handed alpha
Helix 30	30	E	77	95	Right-handed alpha
Helix 31	31	E	119	134	Right-handed alpha
Helix 32	32	E	148	156	Right-handed alpha
Helix 33	33	E	186	210	Right-handed alpha
Helix 34	34	E	212	220	Right-handed alpha
Helix 35	35	E	228	234	Right-handed alpha
Helix 36	36	F	62	66	Right-handed alpha
Helix 37	37	F	77	95	Right-handed alpha
Helix 38	38	F	119	134	Right-handed alpha
Helix 39	39	F	148	156	Right-handed alpha
Helix 40	40	F	189	210	Right-handed alpha
Helix 41	41	F	212	220	Right-handed alpha
Helix 42	42	F	228	234	Right-handed alpha
Helix 43	43	G	62	66	Right-handed alpha
Helix 44	44	G	77	95	Right-handed alpha
Helix 45	45	G	119	134	Right-handed alpha
Helix 46	46	G	148	156	Right-handed alpha
Helix 47	47	G	189	210	Right-handed alpha
Helix 48	48	G	212	220	Right-handed alpha
Helix 49	49	G	228	234	Right-handed alpha

There are 20 sheets in PDB entry 4GM2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	100	106	parallel
Strand 3	A	138	147	parallel
Strand 4	A	169	172	parallel
Strand 5	A	224	227	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	100	106	parallel
Strand 3	A	138	147	parallel
Strand 4	A	162	164	parallel
Strand 5	A	239	240	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	114	115	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	100	106	parallel
Strand 3	B	138	147	parallel
Strand 4	B	169	172	parallel
Strand 5	B	224	227	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	100	106	parallel
Strand 3	B	138	147	parallel
Strand 4	B	162	164	parallel
Strand 5	B	239	240	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	114	115	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	100	106	parallel
Strand 3	C	138	147	parallel
Strand 4	C	169	172	parallel
Strand 5	C	224	227	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	100	106	parallel
Strand 3	C	138	147	parallel
Strand 4	C	162	164	parallel
Strand 5	C	239	240	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	100	106	parallel
Strand 3	D	138	147	parallel
Strand 4	D	169	172	parallel
Strand 5	D	224	227	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	100	106	parallel
Strand 3	D	138	147	parallel
Strand 4	D	162	164	parallel
Strand 5	D	239	240	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	114	115	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	100	106	parallel
Strand 3	E	138	147	parallel
Strand 4	E	162	164	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	100	106	parallel
Strand 3	E	138	147	parallel
Strand 4	E	169	172	parallel
Strand 5	E	224	227	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	114	115	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	100	106	parallel
Strand 3	F	138	147	parallel
Strand 4	F	169	172	parallel
Strand 5	F	224	227	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	100	106	parallel
Strand 3	F	138	147	parallel
Strand 4	F	162	164	parallel
Strand 5	F	239	240	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	114	115	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	72	first strand
Strand 2	G	100	106	parallel
Strand 3	G	138	147	parallel
Strand 4	G	169	172	parallel
Strand 5	G	224	227	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	72	first strand
Strand 2	G	100	106	parallel
Strand 3	G	138	147	parallel
Strand 4	G	162	164	parallel
Strand 5	G	239	240	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	111	first strand
Strand 2	G	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GM2