Analysis of interatomic Contacts of Structural Units in PDB entry:
4GM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GM3 entry

There are 16 chains in PDB entry 4GM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 31	CYS 334
B	VAL 31	CYS 334
C	VAL 31	CYS 334
D	VAL 31	CYS 334
E	VAL 31	CYS 334
F	VAL 31	CYS 334
G	VAL 31	CYS 334
H	VAL 31	CYS 334
I	ARG 3	ARG 3
J	ARG 3	ARG 3
K	ARG 3	ARG 3
L	ARG 3	ARG 3
M	ARG 3	ARG 3
N	ARG 3	ARG 3
O	ARG 3	ARG 3
P	ARG 3	ARG 3

There are no helices in PDB entry 4GM3

There are 56 sheets in PDB entry 4GM3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	41	first strand
Strand 2	A	327	331	anti-parallel
Strand 3	A	315	320	anti-parallel
Strand 4	A	304	309	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	59	64	anti-parallel
Strand 3	A	69	73	anti-parallel
Strand 4	A	79	83	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	101	106	anti-parallel
Strand 3	A	110	115	anti-parallel
Strand 4	A	120	126	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	143	148	anti-parallel
Strand 3	A	153	157	anti-parallel
Strand 4	A	163	167	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	185	190	anti-parallel
Strand 3	A	195	199	anti-parallel
Strand 4	A	205	209	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	222	first strand
Strand 2	A	228	233	anti-parallel
Strand 3	A	237	242	anti-parallel
Strand 4	A	247	253	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	A	273	276	anti-parallel
Strand 3	A	283	287	anti-parallel
Strand 4	A	293	297	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	315	320	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	59	64	anti-parallel
Strand 3	B	69	73	anti-parallel
Strand 4	B	79	83	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	95	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	110	115	anti-parallel
Strand 4	B	121	126	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	153	157	anti-parallel
Strand 4	B	163	167	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	185	190	anti-parallel
Strand 3	B	195	199	anti-parallel
Strand 4	B	205	209	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	222	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	237	242	anti-parallel
Strand 4	B	247	253	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	267	first strand
Strand 2	B	273	276	anti-parallel
Strand 3	B	283	287	anti-parallel
Strand 4	B	293	297	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	41	first strand
Strand 2	C	327	331	anti-parallel
Strand 3	C	315	320	anti-parallel
Strand 4	C	304	309	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	53	first strand
Strand 2	C	59	64	anti-parallel
Strand 3	C	69	73	anti-parallel
Strand 4	C	79	83	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	110	115	anti-parallel
Strand 4	C	120	126	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	143	148	anti-parallel
Strand 3	C	153	157	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	179	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	195	199	anti-parallel
Strand 4	C	205	209	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	222	first strand
Strand 2	C	228	233	anti-parallel
Strand 3	C	237	242	anti-parallel
Strand 4	C	247	253	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	267	first strand
Strand 2	C	273	276	anti-parallel
Strand 3	C	283	287	anti-parallel
Strand 4	C	293	297	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	41	first strand
Strand 2	D	327	331	anti-parallel
Strand 3	D	315	320	anti-parallel
Strand 4	D	304	309	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	53	first strand
Strand 2	D	59	64	anti-parallel
Strand 3	D	69	73	anti-parallel
Strand 4	D	79	83	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	101	106	anti-parallel
Strand 3	D	110	115	anti-parallel
Strand 4	D	120	126	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	137	first strand
Strand 2	D	143	148	anti-parallel
Strand 3	D	153	157	anti-parallel
Strand 4	D	163	167	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	179	first strand
Strand 2	D	185	190	anti-parallel
Strand 3	D	195	199	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	222	first strand
Strand 2	D	228	233	anti-parallel
Strand 3	D	237	242	anti-parallel
Strand 4	D	247	253	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	267	first strand
Strand 2	D	273	276	anti-parallel
Strand 3	D	283	287	anti-parallel
Strand 4	D	293	297	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	327	331	anti-parallel
Strand 3	E	315	320	anti-parallel
Strand 4	E	304	309	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	53	first strand
Strand 2	E	59	64	anti-parallel
Strand 3	E	69	73	anti-parallel
Strand 4	E	79	83	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	95	first strand
Strand 2	E	101	105	anti-parallel
Strand 3	E	110	115	anti-parallel
Strand 4	E	120	126	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	137	first strand
Strand 2	E	143	148	anti-parallel
Strand 3	E	153	157	anti-parallel
Strand 4	E	163	167	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	179	first strand
Strand 2	E	185	190	anti-parallel
Strand 3	E	195	199	anti-parallel
Strand 4	E	205	209	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	222	first strand
Strand 2	E	228	233	anti-parallel
Strand 3	E	237	242	anti-parallel
Strand 4	E	247	253	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	267	first strand
Strand 2	E	273	276	anti-parallel
Strand 3	E	283	287	anti-parallel
Strand 4	E	293	297	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	41	first strand
Strand 2	F	327	331	anti-parallel
Strand 3	F	315	320	anti-parallel
Strand 4	F	304	309	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	53	first strand
Strand 2	F	59	64	anti-parallel
Strand 3	F	69	73	anti-parallel
Strand 4	F	79	83	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	95	first strand
Strand 2	F	101	106	anti-parallel
Strand 3	F	110	115	anti-parallel
Strand 4	F	121	126	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	137	first strand
Strand 2	F	143	148	anti-parallel
Strand 3	F	153	157	anti-parallel
Strand 4	F	163	167	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	179	first strand
Strand 2	F	185	190	anti-parallel
Strand 3	F	195	199	anti-parallel
Strand 4	F	205	209	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	222	first strand
Strand 2	F	228	233	anti-parallel
Strand 3	F	237	242	anti-parallel
Strand 4	F	247	253	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	267	first strand
Strand 2	F	273	276	anti-parallel
Strand 3	F	283	287	anti-parallel
Strand 4	F	293	297	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	41	first strand
Strand 2	G	327	331	anti-parallel
Strand 3	G	315	320	anti-parallel
Strand 4	G	304	309	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	53	first strand
Strand 2	G	59	64	anti-parallel
Strand 3	G	69	73	anti-parallel
Strand 4	G	79	83	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	101	106	anti-parallel
Strand 3	G	110	115	anti-parallel
Strand 4	G	120	126	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	137	first strand
Strand 2	G	143	148	anti-parallel
Strand 3	G	153	157	anti-parallel
Strand 4	G	163	167	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	179	first strand
Strand 2	G	185	190	anti-parallel
Strand 3	G	195	199	anti-parallel
Strand 4	G	205	209	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	217	222	first strand
Strand 2	G	228	233	anti-parallel
Strand 3	G	237	242	anti-parallel
Strand 4	G	247	253	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	264	267	first strand
Strand 2	G	273	276	anti-parallel
Strand 3	G	283	287	anti-parallel
Strand 4	G	293	297	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	41	first strand
Strand 2	H	327	331	anti-parallel
Strand 3	H	315	320	anti-parallel
Strand 4	H	304	309	anti-parallel

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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	53	first strand
Strand 2	H	59	64	anti-parallel
Strand 3	H	69	73	anti-parallel
Strand 4	H	79	83	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	95	first strand
Strand 2	H	101	106	anti-parallel
Strand 3	H	110	115	anti-parallel
Strand 4	H	120	126	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	137	first strand
Strand 2	H	143	148	anti-parallel
Strand 3	H	153	157	anti-parallel
Strand 4	H	163	167	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	174	179	first strand
Strand 2	H	185	190	anti-parallel
Strand 3	H	195	199	anti-parallel
Strand 4	H	205	209	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	217	222	first strand
Strand 2	H	228	233	anti-parallel
Strand 3	H	237	242	anti-parallel
Strand 4	H	247	253	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	267	first strand
Strand 2	H	273	276	anti-parallel
Strand 3	H	283	287	anti-parallel
Strand 4	H	293	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GM3