Analysis of interatomic Contacts of Structural Units in PDB entry:
4GME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GME entry

There are 2 chains in PDB entry 4GME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 24TRP 426
C
 MET 24TRP 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4GME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 73Right-handed alpha
Helix 2
2
A
75 80Right-handed alpha
Helix 3
3
A
86 98Right-handed alpha
Helix 4
4
A
103 126Right-handed alpha
Helix 5
5
A
128 132Right-handed 310
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
206 226Right-handed alpha
Helix 8
8
A
240 252Right-handed alpha
Helix 9
9
A
253 255Right-handed 310
Helix 10
10
A
267 269Right-handed 310
Helix 11
11
A
270 278Right-handed alpha
Helix 12
12
A
290 293Right-handed 310
Helix 13
13
A
294 300Right-handed alpha
Helix 14
14
A
314 328Right-handed alpha
Helix 15
15
A
342 356Right-handed alpha
Helix 16
16
A
368 375Right-handed alpha
Helix 17
17
A
399 405Right-handed alpha
Helix 18
18
C
63 73Right-handed alpha
Helix 19
19
C
75 80Right-handed alpha
Helix 20
20
C
86 98Right-handed alpha
Helix 21
21
C
103 126Right-handed alpha
Helix 22
22
C
128 134Right-handed alpha
Helix 23
23
C
151 165Right-handed alpha
Helix 24
24
C
206 212Right-handed alpha
Helix 25
25
C
213 226Right-handed alpha
Helix 26
26
C
240 251Right-handed alpha
Helix 27
27
C
252 255Right-handed 310
Helix 28
28
C
267 269Right-handed 310
Helix 29
29
C
270 278Right-handed alpha
Helix 30
30
C
290 293Right-handed 310
Helix 31
31
C
294 300Right-handed alpha
Helix 32
32
C
314 328Right-handed alpha
Helix 33
33
C
342 355Right-handed alpha
Helix 34
34
C
368 375Right-handed alpha
Helix 35
35
C
399 404Right-handed alpha
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There are 6 sheets in PDB entry 4GME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 35first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
53 57anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
385 387anti-parallel
Strand 3
A
141 149anti-parallel
Strand 4
A
359 363parallel
Strand 5
A
332 335parallel
Strand 6
A
305 306parallel
Strand 7
A
282 284parallel
Strand 8
A
258 260parallel
Strand 9
A
230 234parallel
Strand 10
A
169 174parallel
Strand 11
A
141 149parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
415 418parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 35first strand
Strand 2
C
41 48anti-parallel
Strand 3
C
53 57anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
380 382first strand
Strand 2
C
385 387anti-parallel
Strand 3
C
141 149anti-parallel
Strand 4
C
359 363parallel
Strand 5
C
332 335parallel
Strand 6
C
305 306parallel
Strand 7
C
282 284parallel
Strand 8
C
258 260parallel
Strand 9
C
230 234parallel
Strand 10
C
169 174parallel
Strand 11
C
141 149parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 205first strand
Strand 2
C
415 418parallel
Strand 3
C
423 424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il