Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMF entry

There are 4 chains in PDB entry 4GMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7TYR 357
B
 GLN 8TYR 357
C
 LYS 7TYR 357
D
 LYS 7TYR 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 4GMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 24Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
104 119Right-handed alpha
Helix 6
6
A
127 130Right-handed 310
Helix 7
7
A
131 149Right-handed alpha
Helix 8
8
A
163 176Right-handed alpha
Helix 9
9
A
178 182Right-handed 310
Helix 10
10
A
285 292Right-handed alpha
Helix 11
11
A
292 310Right-handed alpha
Helix 12
12
A
315 318Right-handed 310
Helix 13
13
A
319 338Right-handed alpha
Helix 14
14
A
349 354Right-handed 310
Helix 15
15
B
18 24Right-handed alpha
Helix 16
16
B
42 52Right-handed alpha
Helix 17
17
B
59 63Right-handed 310
Helix 18
18
B
81 93Right-handed alpha
Helix 19
19
B
104 119Right-handed alpha
Helix 20
20
B
127 130Right-handed 310
Helix 21
21
B
131 148Right-handed alpha
Helix 22
22
B
163 176Right-handed alpha
Helix 23
23
B
178 182Right-handed 310
Helix 24
24
B
285 292Right-handed alpha
Helix 25
25
B
292 310Right-handed alpha
Helix 26
26
B
315 318Right-handed 310
Helix 27
27
B
319 338Right-handed alpha
Helix 28
28
B
349 356Right-handed 310
Helix 29
29
C
18 23Right-handed alpha
Helix 30
30
C
24 26Right-handed 310
Helix 31
31
C
42 52Right-handed alpha
Helix 32
32
C
59 63Right-handed 310
Helix 33
33
C
81 93Right-handed alpha
Helix 34
34
C
104 118Right-handed alpha
Helix 35
35
C
127 130Right-handed 310
Helix 36
36
C
131 149Right-handed alpha
Helix 37
37
C
163 176Right-handed alpha
Helix 38
38
C
178 182Right-handed 310
Helix 39
39
C
285 292Right-handed alpha
Helix 40
40
C
292 310Right-handed alpha
Helix 41
41
C
315 318Right-handed 310
Helix 42
42
C
319 338Right-handed alpha
Helix 43
43
C
349 354Right-handed 310
Helix 44
44
D
18 24Right-handed alpha
Helix 45
45
D
42 52Right-handed alpha
Helix 46
46
D
59 63Right-handed 310
Helix 47
47
D
81 93Right-handed alpha
Helix 48
48
D
104 118Right-handed alpha
Helix 49
49
D
127 130Right-handed 310
Helix 50
50
D
131 148Right-handed alpha
Helix 51
51
D
163 176Right-handed alpha
Helix 52
52
D
178 182Right-handed 310
Helix 53
53
D
285 292Right-handed alpha
Helix 54
54
D
292 310Right-handed alpha
Helix 55
55
D
315 318Right-handed 310
Helix 56
56
D
319 338Right-handed alpha
Helix 57
57
D
349 356Right-handed 310
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There are 12 sheets in PDB entry 4GMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
32 38parallel
Strand 3
A
8 13parallel
Strand 4
A
69 72parallel
Strand 5
A
96 100parallel
Strand 6
A
122 125parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 189first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
226 232anti-parallel
Strand 6
A
235 239anti-parallel
Strand 7
A
246 250anti-parallel
Strand 8
A
277 280anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
341 342parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
69 72parallel
Strand 5
B
96 100parallel
Strand 6
B
122 125parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 189first strand
Strand 2
B
193 200anti-parallel
Strand 3
B
203 210anti-parallel
Strand 4
B
154 159parallel
Strand 5
B
227 232anti-parallel
Strand 6
B
235 239anti-parallel
Strand 7
B
246 250anti-parallel
Strand 8
B
277 280anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
341 342parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
32 38parallel
Strand 3
C
8 13parallel
Strand 4
C
69 72parallel
Strand 5
C
96 100parallel
Strand 6
C
122 125parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 189first strand
Strand 2
C
193 200anti-parallel
Strand 3
C
203 210anti-parallel
Strand 4
C
154 159parallel
Strand 5
C
226 232anti-parallel
Strand 6
C
235 239anti-parallel
Strand 7
C
246 250anti-parallel
Strand 8
C
277 280anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 213first strand
Strand 2
C
341 342parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
32 38parallel
Strand 3
D
8 13parallel
Strand 4
D
69 72parallel
Strand 5
D
96 100parallel
Strand 6
D
122 125parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 189first strand
Strand 2
D
193 200anti-parallel
Strand 3
D
203 210anti-parallel
Strand 4
D
154 159parallel
Strand 5
D
227 232anti-parallel
Strand 6
D
235 239anti-parallel
Strand 7
D
246 250anti-parallel
Strand 8
D
277 280anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
341 342parallel
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