Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMG entry

There are 4 chains in PDB entry 4GMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7TYR 357
B
 LYS 7TYR 357
C
 LYS 7TYR 357
D
 LYS 7TYR 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4GMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 23Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
42 53Right-handed alpha
Helix 4
4
A
59 63Right-handed 310
Helix 5
5
A
82 93Right-handed alpha
Helix 6
6
A
104 118Right-handed alpha
Helix 7
7
A
131 149Right-handed alpha
Helix 8
8
A
163 176Right-handed alpha
Helix 9
9
A
178 182Right-handed 310
Helix 10
10
A
263 267Right-handed 310
Helix 11
11
A
285 292Right-handed alpha
Helix 12
12
A
292 310Right-handed alpha
Helix 13
13
A
315 318Right-handed 310
Helix 14
14
A
319 338Right-handed alpha
Helix 15
15
A
349 354Right-handed 310
Helix 16
16
B
18 24Right-handed alpha
Helix 17
17
B
42 53Right-handed alpha
Helix 18
18
B
59 63Right-handed 310
Helix 19
19
B
82 93Right-handed alpha
Helix 20
20
B
104 118Right-handed alpha
Helix 21
21
B
127 130Right-handed 310
Helix 22
22
B
131 148Right-handed alpha
Helix 23
23
B
163 176Right-handed alpha
Helix 24
24
B
178 182Right-handed 310
Helix 25
25
B
285 292Right-handed alpha
Helix 26
26
B
292 310Right-handed alpha
Helix 27
27
B
315 318Right-handed 310
Helix 28
28
B
319 338Right-handed alpha
Helix 29
29
B
349 354Right-handed 310
Helix 30
30
C
18 24Right-handed alpha
Helix 31
31
C
42 53Right-handed alpha
Helix 32
32
C
59 63Right-handed 310
Helix 33
33
C
76 80Right-handed 310
Helix 34
34
C
82 93Right-handed alpha
Helix 35
35
C
104 119Right-handed alpha
Helix 36
36
C
127 130Right-handed 310
Helix 37
37
C
131 149Right-handed alpha
Helix 38
38
C
163 176Right-handed alpha
Helix 39
39
C
178 182Right-handed 310
Helix 40
40
C
285 292Right-handed alpha
Helix 41
41
C
292 310Right-handed alpha
Helix 42
42
C
315 318Right-handed 310
Helix 43
43
C
319 338Right-handed alpha
Helix 44
44
C
349 354Right-handed 310
Helix 45
45
D
18 25Right-handed alpha
Helix 46
46
D
42 53Right-handed alpha
Helix 47
47
D
59 63Right-handed 310
Helix 48
48
D
82 92Right-handed alpha
Helix 49
49
D
104 118Right-handed alpha
Helix 50
50
D
127 130Right-handed 310
Helix 51
51
D
131 148Right-handed alpha
Helix 52
52
D
163 176Right-handed alpha
Helix 53
53
D
178 182Right-handed 310
Helix 54
54
D
285 292Right-handed alpha
Helix 55
55
D
292 310Right-handed alpha
Helix 56
56
D
315 318Right-handed 310
Helix 57
57
D
319 338Right-handed alpha
Helix 58
58
D
349 354Right-handed 310
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There are 12 sheets in PDB entry 4GMG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
32 38parallel
Strand 3
A
8 13parallel
Strand 4
A
69 72parallel
Strand 5
A
96 100parallel
Strand 6
A
122 125parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 189first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
226 232anti-parallel
Strand 6
A
235 239anti-parallel
Strand 7
A
246 250anti-parallel
Strand 8
A
277 280anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
341 342parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
32 38parallel
Strand 3
B
8 13parallel
Strand 4
B
69 72parallel
Strand 5
B
96 100parallel
Strand 6
B
122 125parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 189first strand
Strand 2
B
193 200anti-parallel
Strand 3
B
203 210anti-parallel
Strand 4
B
154 159parallel
Strand 5
B
226 232anti-parallel
Strand 6
B
235 239anti-parallel
Strand 7
B
246 250anti-parallel
Strand 8
B
277 280anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
341 342parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
32 38parallel
Strand 3
C
8 13parallel
Strand 4
C
69 72parallel
Strand 5
C
96 100parallel
Strand 6
C
122 125parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 189first strand
Strand 2
C
193 200anti-parallel
Strand 3
C
203 210anti-parallel
Strand 4
C
154 159parallel
Strand 5
C
226 232anti-parallel
Strand 6
C
235 239anti-parallel
Strand 7
C
246 250anti-parallel
Strand 8
C
277 280anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 213first strand
Strand 2
C
341 342parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
32 38parallel
Strand 3
D
8 13parallel
Strand 4
D
69 72parallel
Strand 5
D
96 100parallel
Strand 6
D
122 125parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 189first strand
Strand 2
D
193 200anti-parallel
Strand 3
D
203 210anti-parallel
Strand 4
D
154 159parallel
Strand 5
D
227 232anti-parallel
Strand 6
D
235 239anti-parallel
Strand 7
D
246 250anti-parallel
Strand 8
D
277 280anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
341 342parallel
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