Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMH entry

There is 1 chain in PDB entry 4GMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 4GMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
50 66Right-handed alpha
Helix 3
3
A
101 105Right-handed 310
Helix 4
4
A
121 135Right-handed alpha
Helix 5
5
A
153 164Right-handed alpha
Helix 6
6
A
173 185Right-handed alpha
Helix 7
7
A
201 228Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4GMH. Click on sheet of interest to get list of strands forming it: A, B,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 27first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
2 6parallel
Strand 5
A
69 72parallel
Strand 6
A
188 196parallel
Strand 7
A
75 78parallel
Strand 8
A
167 171anti-parallel
Strand 9
A
139 146parallel
Strand 10
A
88 96parallel
Strand 11
A
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 27first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
2 6parallel
Strand 5
A
69 72parallel
Strand 6
A
188 196parallel
Strand 7
A
88 96anti-parallel
Strand 8
A
118 119anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il