Analysis of interatomic Contacts of Structural Units in PDB entry:
4GMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GMJ entry

There are 6 chains in PDB entry 4GMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1089SER 1317
B
 GLN 10GLU 280
C
 GLU 1093SER 1317
D
 ARG 11GLU 280
E
 HIS 1089SER 1317
F
 ARG 11GLU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 4GMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1092 1105Right-handed alpha
Helix 2
2
A
1110 1122Right-handed alpha
Helix 3
3
A
1123 1125Right-handed 310
Helix 4
4
A
1126 1138Right-handed alpha
Helix 5
5
A
1142 1144Right-handed 310
Helix 6
6
A
1145 1157Right-handed alpha
Helix 7
7
A
1158 1178Right-handed alpha
Helix 8
8
A
1185 1203Right-handed alpha
Helix 9
9
A
1204 1207Right-handed 310
Helix 10
10
A
1216 1228Right-handed alpha
Helix 11
11
A
1228 1245Right-handed alpha
Helix 12
12
A
1256 1272Right-handed alpha
Helix 13
13
A
1276 1290Right-handed alpha
Helix 14
14
A
1293 1297Right-handed 310
Helix 15
15
A
1301 1305Right-handed 310
Helix 16
16
A
1308 1312Right-handed 310
Helix 17
17
B
16 18Right-handed 310
Helix 18
18
B
19 34Right-handed alpha
Helix 19
19
B
59 70Right-handed alpha
Helix 20
20
B
109 120Right-handed alpha
Helix 21
21
B
122 130Right-handed alpha
Helix 22
22
B
132 142Right-handed alpha
Helix 23
23
B
158 171Right-handed alpha
Helix 24
24
B
177 189Right-handed alpha
Helix 25
25
B
195 199Right-handed alpha
Helix 26
26
B
200 202Right-handed 310
Helix 27
27
B
208 216Right-handed alpha
Helix 28
28
B
226 247Right-handed alpha
Helix 29
29
B
251 256Right-handed alpha
Helix 30
30
C
1094 1105Right-handed alpha
Helix 31
31
C
1110 1120Right-handed alpha
Helix 32
32
C
1123 1125Right-handed 310
Helix 33
33
C
1126 1138Right-handed alpha
Helix 34
34
C
1142 1144Right-handed 310
Helix 35
35
C
1145 1157Right-handed alpha
Helix 36
36
C
1158 1178Right-handed alpha
Helix 37
37
C
1185 1203Right-handed alpha
Helix 38
38
C
1216 1228Right-handed alpha
Helix 39
39
C
1228 1244Right-handed alpha
Helix 40
40
C
1245 1249Right-handed 310
Helix 41
41
C
1256 1270Right-handed alpha
Helix 42
42
C
1276 1290Right-handed alpha
Helix 43
43
C
1293 1297Right-handed 310
Helix 44
44
C
1301 1305Right-handed 310
Helix 45
45
C
1306 1311Right-handed alpha
Helix 46
46
D
19 31Right-handed alpha
Helix 47
47
D
59 70Right-handed alpha
Helix 48
48
D
109 119Right-handed alpha
Helix 49
49
D
122 130Right-handed alpha
Helix 50
50
D
132 142Right-handed alpha
Helix 51
51
D
158 171Right-handed alpha
Helix 52
52
D
177 189Right-handed alpha
Helix 53
53
D
195 199Right-handed alpha
Helix 54
54
D
200 202Right-handed 310
Helix 55
55
D
208 216Right-handed alpha
Helix 56
56
D
226 247Right-handed alpha
Helix 57
57
D
251 256Right-handed alpha
Helix 58
58
E
1092 1105Right-handed alpha
Helix 59
59
E
1110 1122Right-handed alpha
Helix 60
60
E
1123 1125Right-handed 310
Helix 61
61
E
1126 1138Right-handed alpha
Helix 62
62
E
1145 1157Right-handed alpha
Helix 63
63
E
1158 1178Right-handed alpha
Helix 64
64
E
1186 1203Right-handed alpha
Helix 65
65
E
1204 1207Right-handed 310
Helix 66
66
E
1216 1228Right-handed alpha
Helix 67
67
E
1228 1244Right-handed alpha
Helix 68
68
E
1245 1249Right-handed 310
Helix 69
69
E
1256 1272Right-handed alpha
Helix 70
70
E
1276 1290Right-handed alpha
Helix 71
71
E
1293 1297Right-handed 310
Helix 72
72
E
1306 1311Right-handed alpha
Helix 73
73
F
19 34Right-handed alpha
Helix 74
74
F
59 72Right-handed alpha
Helix 75
75
F
109 120Right-handed alpha
Helix 76
76
F
122 130Right-handed alpha
Helix 77
77
F
132 142Right-handed alpha
Helix 78
78
F
158 171Right-handed alpha
Helix 79
79
F
177 189Right-handed alpha
Helix 80
80
F
195 199Right-handed alpha
Helix 81
81
F
200 202Right-handed 310
Helix 82
82
F
208 216Right-handed alpha
Helix 83
83
F
226 245Right-handed alpha
Helix 84
84
F
251 256Right-handed alpha
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There are 3 sheets in PDB entry 4GMJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
94 98parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
36 42anti-parallel
Strand 5
B
152 155parallel
Strand 6
B
192 194parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
94 98parallel
Strand 3
D
76 82anti-parallel
Strand 4
D
36 42anti-parallel
Strand 5
D
152 155parallel
Strand 6
D
191 194parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 15first strand
Strand 2
F
94 98parallel
Strand 3
F
76 82anti-parallel
Strand 4
F
36 42anti-parallel
Strand 5
F
152 155parallel
Strand 6
F
192 194parallel
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